Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2507 147 3e-30 seq4293 132 6e-26 seq3240 129 7e-25 seq4399 102 9e-17 seq2492 91.5 2e-13 seq2011 84.2 3e-11 >seq2507 Length=3123735 Score = 147 bits (162), Expect = 3e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 170126 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 170185 || || ||||| || || ||||| || || ||||| ||||||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 170186 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCA 170245 ||||| |||||||| || |||||||||||||| || || || || ||||| ||||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 170246 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCG 170305 ||| |||| || ||||| || ||||||||| | || |||||||| || ||||| || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 170306 AGAGGTAACGCACT 170319 | || ||||| || Sbjct 2652107 CGTGGAAACGCTCT 2652094 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 169820 CAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTG 169879 ||||| || || || ||||| |||| ||||| || |||||||| || || || | ||| Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 169880 GGCGGAGCATTGCTTT-CT----GCTATCCATGGTGTTACAGTAGAGAACACATTGTATG 169934 |||| || |||| | || ||||||||||||| |||| |||| || || | | || Sbjct 2014013 GGCGCTGC--TGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 169935 AAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 169994 |||| ||||| |||||||| ||| || ||| | | || || | ||| | |||| Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 169995 ATTCTATGGTCACTGCAAA 170013 |||| |||||||||| || Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || ||||| ||| |||| ||||||||| || |||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCTG 168850 || || |||||||| || || || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 168658 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 168717 || |||||||| || || | || || ||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 168718 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTG 168777 |||||||| || | ||||| |||| |||||||| | || || ||||| ||| || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 168778 AACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 168818 ||||||||| || |||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 168734 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGG 168793 ||||| |||| |||||||| | || || ||||| ||| || | ||||||| | || | Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 168794 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 168849 ||||||||||||||||||| ||||| || || |||||||| || || || |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2492 Length=5361119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 169546 TCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGT 169605 || |||||||||||| ||||| ||| ||||||||||| || ||||| |||| ||||| Sbjct 375390 TCAAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 375449 Query 169606 AGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACG 169665 || || || || || || | | | || ||||||||| | | || |||||| | || || Sbjct 375450 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 375509 Query 169666 TCTTATTGGCATCCGTCCTTATAATGCTATTGCAT 169700 | || | || ||||||||||| || |||| Sbjct 375510 ATCTGTTCAATTGCGACCTTATAATGCAATCGCAT 375544 >seq2011 Length=5003947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/187 (71%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 169415 GGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAA 169471 |||||||| ||||| ||||| ||||| ||||| ||| | || |||||| || | ||| Sbjct 3423399 GGTACAGCCTTTGTAACTTCATGGTATACCCATGGAAT-GC--CCAGTTCCTATTTGGAA 3423343 Query 169472 GGCGCTAACTTCCTC--ACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCAC 169529 || | ||| | ||||| || || | |||||| | | | | ||| || Sbjct 3423342 GGATGCCATTTCTTTTAACTGCCGCAGTTTCCGCTCCTGCTAATAGTTTAGCACATTCTT 3423283 Query 169530 TGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTG 169589 || | || ||||||||||| ||||||||||| ||||| ||| ||||||||||| || | Sbjct 3423282 TGTTGTTACTATGGGGTCCGGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCG 3423223 Query 169590 GTCTCTG 169596 |||| || Sbjct 3423222 GTCTGTG 3423216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574348616087400