Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq4293 96.9 4e-15 seq3240 96.9 4e-15 seq6319 87.8 2e-12 seq4399 86.0 7e-12 >seq4293 Length=5823730 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 169328 AACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCT 169387 ||| | || || || || || ||||||| || || ||| | | ||| | || | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | |||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 169448 GCTCACAACTTCCCACTAGACTTAGC 169473 ||||| |||||||| |||||| |||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq3240 Length=2626545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 169284 TATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTA 169343 || || | ||||| || || | |||||| | || ||||| |||||| | || || || | Sbjct 808433 TAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 169344 ACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTAC 169403 | || |||||||| || || ||| | | ||| | ||| ||| |||| ||| | Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 ||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq6319 Length=5966559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117 ||||| || || |||||| || ||||||||||| | ||||| ||| | | ||||| Sbjct 1421239 TTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1421180 Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACC 169177 || || || || | |||| | || | ||||||| ||||| ||||| |||||||| Sbjct 1421179 GAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAGAAACT 1421120 Query 169178 TATAATATTGTTGCAGCACATGGATA 169203 |||||||| || || || ||||| || Sbjct 1421119 TATAATATCGTAGCTGCTCATGGTTA 1421094 >seq4399 Length=3202280 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 ||| |||| ||| | ||||| | | ||||||||||||||||| |||||||| ||||| Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 ||||| |||||||| |||||| |||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGC 214186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564318798674400