Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2507 123 3e-23 seq4293 111 2e-19 seq6103 109 6e-19 seq3240 109 6e-19 seq4399 84.2 3e-11 >seq2507 Length=3123735 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 173788 GTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 173847 || ||||| || || ||||| | || || ||||| || || || ||||| | ||||| Sbjct 2652290 GTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCG 2652231 Query 173848 GAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 173907 |||||||| || || || ||||||||||| || ||||| || | || |||||||| | Sbjct 2652230 GAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGT 2652171 Query 173908 GCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTA 173967 || |||||| | || |||||| || ||||| ||| | |||| ||||| || || || Sbjct 2652170 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTA 2652111 Query 173968 CCAAGAGGTAACGCACTTTAA 173988 || | || ||||| |||||| Sbjct 2652110 CCCCGTGGAAACGCTCTTTAA 2652090 >seq4293 Length=5823730 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 172657 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCT 172716 ||||| || |||||||| |||||||||| || || ||| | | ||| | | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 172717 ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAAT 172776 || |||| ||| |||||||| | || ||||| ||||||||||||||||||||| | ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 172777 GCACACAACTTCCCATTAGACCTTGCTTCTG 172807 || || |||||||| ||||||| ||| ||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq6103 Length=2400612 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 157891 GGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 157950 || || || || ||| |||| || || || || | | | ||| | | ||||| ||| | Sbjct 1875885 GGCTATTACGGCACCTTCACGCCGCCGGTGATCCTGAGGAACATCATGGAGAACCCTGCT 1875944 Query 157951 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGA-AGCTTT 158009 |||||||| |||||||||||||| || ||||| |||||||| |||||||| ||| | Sbjct 1875945 TGGTACACTCAGTACACTCCCTATCAGGCCGAGATCTCTCAGGGCAGATTGGAGAGC-CT 1876003 Query 158010 ATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCT 158069 |||||| ||| || | ||||| || ||||| || || ||||| | ||||| || || Sbjct 1876004 GCTCAATTTCCAGACCGTGATCACTGATCTCACCGGCCTGCCGATGTCCAACGCGTCCCT 1876063 Query 158070 ATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | || || | ||||| || || || || ||| Sbjct 1876064 CCTCGACGAGGGTACTGCTGCGGCTGAGGCCATG 1876097 >seq3240 Length=2626545 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 172613 TATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCA 172672 || || | ||||| || || | |||||| | || ||||| |||||||| || ||||||| Sbjct 808433 TAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 172673 ACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTC 172732 | ||||||||||| || || ||| | | ||| | || ||| |||| ||| || Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 172733 TTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAA 172770 ||||| | || ||||| ||||||||||||||||||||| Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAA 808590 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 172716 TACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAA 172775 ||| |||| ||| || ||||| | | ||||| ||||||||||||||||||||| | || Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 172776 TGCACACAACTTCCCATTAGACCTTGCTTCT 172806 ||| || |||||||| ||||||| ||| || Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587923262110800