Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq4293 118 1e-21 seq2507 102 9e-17 seq3240 95.1 1e-14 seq4399 84.2 2e-11 >seq4293 Length=5823730 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 163222 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 163281 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 163282 ACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAAT 163341 || ||||| || |||| ||||| || | ||||||||||||||||| || || ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 163342 GCTCACAACTTCCCACTTGACCTGGCAGCTGCCGA 163376 ||||| |||||||| || ||||| || |||| ||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTGTCGA 2155102 >seq2507 Length=3123735 Score = 102 bits (112), Expect = 9e-17 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 164134 CAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 164193 ||||| |||||||| ||||| |||| ||| || ||||||||||| ||||||||| || | Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 164194 GGC---GGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAA 164250 ||| | || | |||| ||||| || || | ||| | |||||||| | | |||| Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 164251 GATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTAT 164310 ||||| || ||||| || || || ||| | | || || | ||| | |||||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 164311 TCTATGGTCACTGCAAA 164327 || |||||||||| || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 164440 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAA 164499 || || ||||| || || ||||| || || || || || ||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 164500 GATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCA 164559 |||||||| || || |||||||| ||||| || || | || |||||||| | ||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 164560 TGGTTAGCACCAGTTGACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGC 164617 ||| | || | || |||| || || ||| || | |||||||| || || || | Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAAC--CTTATATTCCCAGAGGAGGTTCTAC 2652110 Query 164618 CGAGAGGTAATGCGCTTTAAT 164638 | | || || || ||||||| Sbjct 2652109 CCCGTGGAAACGCTCTTTAAT 2652089 >seq3240 Length=2626545 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 163180 GGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCA 163237 || |||||||| || || | || | ||| || ||||| |||||||| || ||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGG--TATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 163238 ACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTC 163297 | |||||||| || | ||||| |||| |||||||| | || || ||||| || || Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 163298 TGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAA 163340 | ||||| || | ||||||||||||||||| || || || Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 163256 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGG 163315 ||||| |||| |||||||| | || || ||||| || || | ||||| | | | Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 163316 GTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCT 163371 |||||||||||||||| || || |||||||| |||||||| || ||||| || ||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557462690631000