Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2507 174 2e-38 seq4293 120 3e-22 seq6319 111 2e-19 seq4399 87.8 2e-12 >seq2507 Length=3123735 Score = 174 bits (192), Expect = 2e-38 Identities = 155/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 ||||| ||||| ||||| ||||| |||||||| |||||||| |||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 ||||| || ||||| || ||||||||||| || || ||||| ||||||||| ||||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481 ||| | || || ||||| |||||||| ||| || | ||||| ||||| || || ||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 169482 CGAGGTAATGCCCT 169495 || || || || || Sbjct 2652107 CGTGGAAACGCTCT 2652094 Score = 111 bits (122), Expect = 2e-19 Identities = 144/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 168996 CAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTG 169055 ||||| || ||||| |||||| ||| ||||||||||||||||| || || ||| | ||| Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 169056 GGAGGAGC--CT-TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAA 169112 || | || || | || | || || ||||||| |||| |||| |||||| | | | || Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 169113 GATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTAT 169172 |||||||| |||||||| ||| || ||| || ||||| | || | || ||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 169173 TCAATGGTTACTGCAAA 169189 ||| |||| ||||| || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 167925 AACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCT 167984 ||||| || |||||||| |||||||| | | | |||||||| ||| || | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| || | || ||||| ||| || ||||||||||||||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq6319 Length=5966559 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 167652 GTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTT 167711 |||||||||||||| || |||||||| ||||| ||||| |||| |||||| || | Sbjct 1421242 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATC 1421183 Query 167712 CGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAG 167771 | |||||||| |||| ||| | || | ||||||| ||||| || || ||||| Sbjct 1421182 AGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAGAA 1421123 Query 167772 ACGTATAACATCGTCGCTGCTCATGGTTA 167800 || ||||| ||||| |||||||||||||| Sbjct 1421122 ACTTATAATATCGTAGCTGCTCATGGTTA 1421094 >seq4399 Length=3202280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 167984 TACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 168043 ||||||||| || | | ||||| | | || ||||||||||||||||| || ||||| Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 168044 TGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 |||||| ||||||||||| ||||| |||||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560486032722000