Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4293 96.9 5e-15 seq3240 95.1 2e-14 seq6319 89.7 8e-13 >seq4293 Length=5823730 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 ||||| || |||||||| |||||||| | ||| || || ||| || || | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || |||||||| | || |||||||||||||| ||||| || ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||| |||||||| ||||| | ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 216090 GTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACT 216149 |||||||| ||||| | ||| || |||||||| |||||||| || |||||||| | Sbjct 808436 GTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATT 808495 Query 216150 TCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTA 216209 ||||||| ||||| || || ||| || ||| ||||||||| || || ||| Sbjct 808496 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTA 808555 Query 216210 ACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAA 216249 || | || |||||||||||||| ||||| || ||||| Sbjct 808556 ACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq6319 Length=5966559 Score = 89.7 bits (98), Expect = 8e-13 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 215856 GTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAA 215915 |||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | | Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 215916 TCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGG 215975 |||| || || || || | |||| | || | ||||||| ||||| |||||||| | Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 215976 AAACATACAACATCGTAGCTGCACACGGTTA--CTTTG 216011 |||| || || ||||||||||| || ||||| ||||| Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTATTCTTTG 1421087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744919498184400