Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3240 138 1e-27 seq4293 132 6e-26 seq2507 127 3e-24 seq4399 111 2e-19 seq2492 82.4 9e-11 >seq3240 Length=2626545 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 182589 GGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAAC 182648 || |||||||| || || | ||| || ||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 182649 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTG 182708 |||||||| || | ||||| |||| |||||||| |||| |||||||| ||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 182709 AACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 182749 ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 182750 |||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 182751 GCACACAACTTCCCACTAGATCTTGCTGCTG 182781 || || |||||||| ||||| || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq2507 Length=3123735 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 || || ||||| || || ||||| ||||| || || || |||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119 ||||| |||||||| || |||||||| || || || || | || ||||| | ||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCT 184179 ||| | || || ||||| || ||||| || ||||||| ||||||||||| |||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 184180 AGAGGCAATGCTCTTTGATG 184199 | || || ||||||| ||| Sbjct 2652107 CGTGGAAACGCTCTTTAATG 2652088 Score = 105 bits (116), Expect = 8e-18 Identities = 155/215 (72%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 183676 AGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATG 183735 ||||| |||| |||| |||||||| | || ||||| || | ||| || ||||||||| Sbjct 2014087 AGATTGATATT-TTCCA--AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATG 2014032 Query 183736 GGAGTTGCTGGTATACTAGGAGGAGCA---CTACTCAGTGCTATCCATGGTGTCACAGTA 183792 || ||||||||| || | || | || ||||| | ||||||||||||| ||| || Sbjct 2014031 GGGGTTGCTGGTGTATTGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATA 2013972 Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852 || ||||| | | ||||||||| || ||||| |||||| || ||| | | ||| Sbjct 2013971 GAAAATACTGTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 2013912 Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAA 183887 |||| ||| | || ||||| |||| || || || Sbjct 2013911 CAAGCTGAAAAAACTTATTCAGTGGTCACTGCTAA 2013877 >seq4399 Length=3202280 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 182665 TTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTG 182724 ||||| |||| |||||||| |||| |||||||| ||| | | ||||| | | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 182725 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 ||||||||||||||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2492 Length=5361119 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 183430 CAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489 ||||| || ||| || ||||| ||| | || || || |||| |||||| || |||||| Sbjct 375400 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 375459 Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGT 183549 || || || | || || ||||||||| | || || |||||||||||||| | || Sbjct 375460 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 375519 Query 183550 ATCCGTCCTTACAATGCTATTGC 183572 | || ||||| ||||| || || Sbjct 375520 TTGCGACCTTATAATGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611562917889000