Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3240 132 5e-26 seq4293 127 2e-24 seq2507 114 1e-20 seq4399 93.3 5e-14 seq666 91.5 2e-13 seq2492 87.8 2e-12 >seq3240 Length=2626545 Score = 132 bits (146), Expect = 5e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 165559 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAAC 165618 ||||||||||| |||||| | ||| | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 165619 TTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTG 165678 |||||||| ||| | ||||||||||| | || |||||||||||| || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 165679 AACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 165719 ||||| ||| || |||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 ||||| || |||||||| |||||||| | | | ||||||||||| | || | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| |||| ||||| ||| || |||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCTGCCGA 165755 ||||| |||||||| || ||||| ||||||| ||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTGTCGA 2155102 >seq2507 Length=3123735 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 166674 CAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAG--GTATT- 166730 ||||| || || || |||||| ||| |||||||||||||||||| || || | ||||| Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 166731 CTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAA 166790 || || ||| | || | || |||||||||| |||| |||| || ||| | | | || Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 166791 GATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTAT 166850 |||||||| |||||||| ||| || || || | ||||||| ||| |||| ||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 166851 TCAATGGTTACAGCAAA 166867 ||| |||| || || || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq4399 Length=3202280 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 165660 TACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 165719 |||||||||||| || | ||||| | | || |||||||||||||||||||| ||||| Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 165720 CGCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 ||||| |||||||| || ||||| |||||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq666 Length=4378875 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 165493 TTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCT 165552 ||||||| ||| ||||||||||| ||||| | || |||||||| | || |||||| Sbjct 3957873 TTCCAATGCGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCT 3957814 Query 165553 GTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCA 165597 ||||| ||||| |||| |||||| | ||| ||||||| |||||| Sbjct 3957813 GTAGTAGGTATATGGTCTACTGCTTTAGGTATTAGCACTATGGCA 3957769 >seq2492 Length=5361119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 166404 GAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCT 166463 || || ||||| ||||| | ||||| ||| | || || || ||| | ||||||||| Sbjct 375394 GAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCT 375453 Query 166464 CTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCT 166522 |||||||| ||||| | ||||| ||||||||| | || || |||||| | ||||| ||| Sbjct 375454 CTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT 375513 Query 166523 AGTAGGTATTCGTCCGTACAATGCAATCGC 166552 || | || || || ||||||||||| Sbjct 375514 -GTTCAATTGCGACCTTATAATGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563538168547200