Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3240 100 3e-16 seq4293 93.3 5e-14 >seq3240 Length=2626545 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 170488 ATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTC 170547 |||||||| ||| | | ||||| |||| ||||| || ||||| ||||| || || ||| Sbjct 808438 ATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 808497 Query 170548 AACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAAC 170607 ||||| || | || ||| | ||| ||| || ||| ||||| || || ||||| Sbjct 808498 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAAC 808557 Query 170608 AGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAA 170645 | || ||||| ||||||||||| |||||||| ||||| Sbjct 808558 CGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 170527 AACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCT 170586 ||||| ||||| || || |||||||| | | || ||| | ||| ||| | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 170587 ACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAAT 170646 || ||||| || |||||||| | || ||||| ||||||||||| |||||||| |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 170647 GCACACAACTTCCCACTTGAC 170667 || || |||||||| || ||| Sbjct 2155136 GCTCATAACTTCCCTCTAGAC 2155116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582721194132000