Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq6319 102 9e-17 seq3240 102 9e-17 seq4293 93.3 5e-14 >seq6319 Length=5966559 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 84243 TAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAG 84302 || || |||||||| || |||||||||||||| || ||||| ||||| ||||||| | Sbjct 1421094 TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAACCTTCA 1421153 Query 84303 TTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGC 84362 || | |||||||||| ||||| | ||| | | ||| || || | ||||||||| Sbjct 1421154 TTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGC 1421213 Query 84363 ATTGCAGAGAATAGAGCTCCACCGAATACAC 84393 || ||| |||||| | || |||||||||| Sbjct 1421214 ATAGCACTGAATAGGGAACCGCCGAATACAC 1421244 >seq3240 Length=2626545 Score = 102 bits (112), Expect = 9e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 84000 TTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTA 84059 |||||||| ||||| |||||||||||||| || || |||| | ||| ||||| ||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 84060 TTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTA 84119 || | ||||| ||| ||||| || | | || ||||| || || ||||| || || Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 84120 AATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCC 84160 || ||||| ||||| | ||| | ||||| |||||| || || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq4293 Length=5823730 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| || || ||||| Sbjct 2155123 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAAGA 2155182 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 2155183 ATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAAATTGGTTGAAATTG 2155242 Query 84105 AATCCATTCAGATT 84118 || ||||| || || Sbjct 2155243 AAACCATTTAGGTT 2155256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571149312287400