Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq281 91.5 2e-13 >seq281 Length=1258992 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | || |||||| ||||| ||| Sbjct 239861 CCCCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATTGGAACAATGCCA 239920 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || |||||||| ||| | || | |||||| || ||| Sbjct 239921 TTAGATGTGCCATTTGTCCCTCTGATATAACTACCAGTTGCACGAATATTATGAACTGAT 239980 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || || || || ||| || | ||||||| || | |||||||||||| Sbjct 239981 ACCCCAATCCCTCCAGCTGATTTGCTGATGACAGCACACTCCTTCAACGTATCATAAATT 240040 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || || || ||| |||| Sbjct 240041 CCTTCAATGCTGTCCTCTTTCAT 240063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561986506204200