Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq666 123 2e-22 seq2011 102 7e-16 seq1810 102 7e-16 seq5554 100 2e-15 seq5370 100 2e-15 seq5369 100 2e-15 seq2492 98.7 8e-15 seq790 95.1 1e-13 seq1287 93.3 3e-13 seq813 91.5 1e-12 >seq666 Length=4378875 Score = 123 bits (136), Expect = 2e-22 Identities = 113/140 (81%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || || || || || || |||||||| || |||||||| || || |||| Sbjct 133626 ATGCAGTTGTCACGGTCCCTGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAGGATG 133567 Query 550458 CTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||| ||| |||||||| || |||||| | ||||| |||||||| || ||||||||||| Sbjct 133566 CTGG-CGTGATTGCTGGGCTCAATGTTATGCGTATCATCAATGAGCCCACTGCTGCTGCT 133508 Query 550517 CTTGCATATGGACTTGATAA 550536 |||| ||||| |||||||| Sbjct 133507 ATTGCCTATGGCCTTGATAA 133488 >seq2011 Length=5003947 Score = 102 bits (112), Expect = 7e-16 Identities = 160/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| ||||| |||||||| ||| | | ||| |||||||||||||| || || Sbjct 3036684 GAGCCTGAGAACAAGGTGAAGGGTGGACTCTTTCTGG--ATATTGTAATCAGCGAGGGTG 3036741 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||||| || ||||| ||||| || || |||||||| ||||| || || || Sbjct 3036742 CGCCCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATCCCC 3036801 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429 || || || ||||| ||| || || || || || || |||| | || || Sbjct 3036802 TCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATGGT----GTCTGAGCTCTCCACCTC 3036857 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||| |||||| || || || || || ||||| || ||||| Sbjct 3036858 GAGCGTAATAGTTTTCCCTGTCAGGGTCTTGACGAATATCTGCAT 3036902 >seq1810 Length=4673341 Score = 102 bits (112), Expect = 7e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||||| || | || ||||| |||||| |||||| || || || || || Sbjct 4157656 CTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCCAGTGTA 4157715 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||| || || || ||||| ||||| || ||||| || || ||||| ||| Sbjct 4157716 CGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATCCCT 4157775 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || ||||| || ||||| || || ||||| ||||| | | | || || Sbjct 4157776 TCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAACCTCCAGG 4157835 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| || || || |||||||| ||||| Sbjct 4157836 GTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 Score = 95.1 bits (104), Expect = 1e-13 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||||||||||| || || |||||||| || |||| || || ||||| || || || || Sbjct 4156972 CTGAGACGGAGCACCAGGTGAAGGGTCGATTCCTTTTGT-ATGTTGTAGTCGGCGAGGGT 4157030 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || ||| ||||| || || |||||||| || || || ||||| || || || || || Sbjct 4157031 CCTCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATCCC 4157090 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 ||| || || ||||| || ||| || || || || || | | | || || | Sbjct 4157091 TTCCTTGTCCTGAATCTTGGTTTTCACATTATCTATGGTGTCCGAGCTCTCCAC-CTCAA 4157149 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | |||||||||||||| || || || || || ||||| Sbjct 4157150 GAGTGATGGTTTTACCAGTAAGGGTCTTCACAAAGATCTGCAT 4157192 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| ||||| || | || ||||| ||| || ||| ||||||||||| || || Sbjct 4157428 CTGAGGCGGAGGACTAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTC 4157487 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||| || || || || || ||||| || || || ||||| || || ||||| ||| Sbjct 4157488 CTCCCATCCTCCAGCTGCTTCCCAGCAAATATGAGCCTCTGCTGGTCCGGGGGAATCCCT 4157547 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || ||||| || ||||| || || ||||| || || | | | || | | || Sbjct 4157548 TCCTTATCCTGGATTTTGGTCTTCACATTATCAATCGTGTCCGAGCTTTCGACCTCCAAG 4157607 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || |||||||| || || |||||||| ||||| Sbjct 4157608 -GTAATGGTCTTGCCAGTAAGGGTCTTCACGAAAATCTGCAT 4157648 >seq5554 Length=4157884 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| || || |||| | ||||| || ||||||||| Sbjct 322889 GCTGTTATCACTGTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCT 322948 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||||| |||||||| || |||| | | || |||||||| || ||||||||||| || Sbjct 322949 GGACGAATTGCTGGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTC 323008 Query 550520 GCATATGG 550527 ||||||| Sbjct 323009 TCATATGG 323016 >seq5370 Length=1890397 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| || || |||| | ||||| || ||||||||| Sbjct 1737469 GCTGTTATCACTGTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCT 1737410 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||||| |||||||| || |||| | | || |||||||| || ||||||||||| || Sbjct 1737409 GGACGAATTGCTGGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTC 1737350 Query 550520 GCATATGG 550527 ||||||| Sbjct 1737349 TCATATGG 1737342 >seq5369 Length=1591519 Score = 100 bits (110), Expect = 2e-15 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| || || ||||| ||||||||| || || ||||| || || |||||||| | || Sbjct 1427505 AATGTTATAGTCAGCAAGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCT 1427564 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||| || || || |||||||| || |||||||| || || || |||||||| Sbjct 1427565 CTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGT 1427624 Query 563412 ATCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| | | ||| ||||| || | || ||||| || || || || || ||||||| Sbjct 1427625 ATCAGAGCTCTCTAC-CTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTT 1427683 Query 563471 GCAT 563474 |||| Sbjct 1427684 GCAT 1427687 >seq2492 Length=5361119 Score = 98.7 bits (108), Expect = 8e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || | ||||||||| |||||||| ||||| Sbjct 4927844 ACTGTGCCTGCCTACTTCAATGACTCCCAGAGGACAGCTACTAAGGATGCTGGCCGTATC 4927903 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| || | ||||||||||| |||||||| || ||||| || |||| || ||||| Sbjct 4927904 GCTGGTCTAGAAGTTCTTCGTATAATCAATGAGCCGACTGCAGCATCACTGGCGTATGG 4927962 >seq790 Length=1848252 Score = 95.1 bits (104), Expect = 1e-13 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| |||||||| ||| ||||| || || || || || ||||| Sbjct 1588448 GAGACGGAGGACAAGGTGAAGGGTCGACTCCTTTTGG--ATGTTATAGTCCGCAAGAGTG 1588391 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||||||||| || || ||||| || || || |||||||| || ||||| || Sbjct 1588390 CGACCATCTTCAAGTTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCC 1588331 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 || || || ||||| ||| ||| || || || ||||||| Sbjct 1588330 TCCTTGTCCTGAATCTTTGCTTTGACATTATCGATGGTATCAG 1588288 >seq1287 Length=5097827 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| | || || | || || ||||| || || ||||| |||||| | ||| ||| Sbjct 1660396 GTCACGAAAGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCACAAAGGACAGCAACT 1660455 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| || || ||||| || | | ||||| || || |||||||||||||||||| Sbjct 1660456 AAAGATGCGGGTCGGATTGCCGGTTTGGAAGTTCTCCGGATCATCAATGAACCTACTGCT 1660515 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 || | || || ||||| |||| || Sbjct 1660516 GCATCCCTGGCTTATGGGTTTGAGAA 1660541 Score = 87.8 bits (96), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 |||| |||||||| ||||| || |||||||| || || |||||||| | |||||||||| Sbjct 1662091 TAGATGGTATTCCACCTGCACCGCGTGGAGTTCCTCAGATTGAAGTGAAGTTCGATATCG 1662150 Query 552562 ATGCCAATGGAATTTT 552577 |||||||||| ||||| Sbjct 1662151 ATGCCAATGGCATTTT 1662166 >seq813 Length=2976281 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| ||| | || || ||||| ||||||||| ||| Sbjct 1797432 ACGGTTCCTGCCTACTTCAATGACTCCCAAAGGCAGGCCACTAAGGATGCTGGAGTGATT 1797373 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || || | || || ||||||||||| || ||||| || |||| ||||| Sbjct 1797372 GCTGGTCTGAACGTGATGCGCATCATCAATGAACCCACCGCTGCAGCTATTGCCTATGGT 1797313 Query 550529 CTTGATAA 550536 ||||| || Sbjct 1797312 CTTGACAA 1797305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028375545103450