Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq4293 111 5e-20 seq3240 102 2e-17 seq4399 80.6 8e-11 >seq4293 Length=5823730 Score = 111 bits (122), Expect = 5e-20 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 |||||||||||||| || || ||||| | ||||| ||| | | || ||||| | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq3240 Length=2626545 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26597 GGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAAC 26656 || || ||| | || || | |||||| |||| ||||| || |||||||||||||| || Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 26657 TTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTA 26716 || ||||| || ||||| ||| | | || |||| ||| ||||||||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 26717 AACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||||| |||||||| || | ||||||||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||| ||||||||| | | ||||| | |||||| || | ||||||||||| || ||||| Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 26758 TGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||||| || || ||| |||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGC 214186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146696073945720