Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4293 102 2e-17 seq4399 91.5 4e-14 seq3240 91.5 4e-14 >seq4293 Length=5823730 Score = 102 bits (112), Expect = 2e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || || ||||||||||| ||||||||||| Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGT 2155196 >seq4399 Length=3202280 Score = 91.5 bits (100), Expect = 4e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | ||||||| ||| ||||||||||| Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGT 214271 >seq3240 Length=2626545 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 36000 TTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTT 36059 ||||| ||||||||||||||||| || | || || ||||||| ||| ||||||||||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 36060 GGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTA 36119 | || | || | |||||| || || || ||||| || || || || || || Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 36120 AAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 36157 |||||||||||| || || | ||| |||| ||| || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 808438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150423303426370