Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4293 102 2e-17 seq4399 91.5 4e-14 seq3240 87.8 5e-13 >seq4293 Length=5823730 Score = 102 bits (112), Expect = 2e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 |||| || ||||| || | ||| |||||||| Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGT 2155196 >seq4399 Length=3202280 Score = 91.5 bits (100), Expect = 4e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 ||| | ||||| | | ||| |||||||| Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGT 214271 >seq3240 Length=2626545 Score = 87.8 bits (96), Expect = 5e-13 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 5222 TTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTG 5281 || ||||| ||||| ||||||||||||||||| || ||||| | | ||| |||||||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 5282 GGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTA 5341 || | | ||| | ||||| || || || ||||| || || || || || || Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 5342 AAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 5379 |||||||||||| ||| || | || |||| ||| || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 808438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152618049712830