Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4293 96.9 1e-15 seq3240 91.5 4e-14 seq4399 87.8 5e-13 >seq4293 Length=5823730 Score = 96.9 bits (106), Expect = 1e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 2155111 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2155170 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 || ||||||||||| ||||||||||| Sbjct 2155171 GCGCGGTTAAGAATATCAGCCCAAGT 2155196 >seq3240 Length=2626545 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25480 TTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTT 25539 ||||| ||||||||||||||||| || | || || ||||||| ||| ||||||||||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 25540 GGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTA 25599 | || | || | |||||| || || || ||||| || || || || || || Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 25600 AAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 25637 |||||||||||| || || | ||| |||| ||| || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 808438 >seq4399 Length=3202280 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 214186 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 214245 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 | ||||||| ||| ||||||||||| Sbjct 214246 ACGCGGTTAATAATATCAGCCCAAGT 214271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151962185297780