Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2011 125 6e-24 seq1810 116 3e-21 seq1932 87.8 1e-12 >seq2011 Length=5003947 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || ||||| ||||| || || || || ||||| ||||| || Sbjct 3036904 CCTCCTCTGAGCCTCAGCACCAAATGCAGGGTCGACTCCTTCTGGATATTATAATCCGCC 3036963 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| || | ||||| || ||||| |||| ||||| ||||| || ||| Sbjct 3036964 AGGGTCCTGCCATCATCGAGCTGCTTTCCGGCAAAGATCAGCCGCTGCTGATCCGGAGGA 3037023 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || || || | || | |||||||| | || || Sbjct 3037024 ATACCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCAATCGTGTCAGAGCTCTCGACC 3037083 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||| |||||||||| ||| || || || |||||||| Sbjct 3037084 TCCAACGTGATCGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 3037130 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||||||||| | || | | | || ||||| ||| Sbjct 3037384 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTGCGGCCGTCCTCCAACTGC 3037443 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| | ||| || || || || |||||||| |||||||| || || Sbjct 3037444 TTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTG 3037503 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || ||||| ||||||| ||| |||||||| Sbjct 3037504 GCCTTGACGTTGTCGATCGTGTCCGAACTCTCGACTTCGAGAGTGATCGTCTTGCCGGTC 3037563 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 3037564 AAGGTCTTGACGAAGATCTGCAT 3037586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || || || || || || || || ||||||||||| | || | | | Sbjct 3037143 ACGGAGAACGAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCTAGGGTGCGGCC 3037202 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| ||||| || || || |||| | ||| || || ||||| |||||||| || Sbjct 3037203 GTCCTCCAACTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTT 3037262 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || || | || | ||||| || | || || || | |||| Sbjct 3037263 ATCTTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACCTCCAACGTGAT 3037322 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| || | ||| || || || |||||||| Sbjct 3037323 CGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 3037358 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || ||||| || ||||||||||| |||| || | | || || | ||| Sbjct 3036700 TGAAGGGTGGACTCTTTCTGGATATTGTAATCAGCGAGGGTGCGCCCGTCTTCAAGCTGC 3036759 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | || || || ||||| || || || || || ||||| ||| Sbjct 3036760 TTTCCTGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATCCCCTCCTTGTCCTGAATCTTT 3036819 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| || || || | ||||| || || Sbjct 3036820 GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGCGTAATAGTTTTCCCTGTC 3036879 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 3036880 AGGGTCTTGACGAATATCTGCAT 3036902 >seq1810 Length=4673341 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | || | || ||||||||||| ||||| || || |||||||| || | Sbjct 4157192 TTCCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTG 4157251 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| || | ||||| || ||||| || | | |||||| || || | Sbjct 4157252 CAAGAGTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAG 4157311 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || || ||||| || ||| | || | ||||| || |||| | Sbjct 4157312 GGATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGA 4157371 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | || ||||| || | ||||| ||||| || ||||| Sbjct 4157372 CCTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | ||| | ||| || || ||||| ||||||||||| ||||| || |||| Sbjct 4157648 TTCCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGG 4157707 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | |||| || | ||||| || ||||| || | | ||| || || || | Sbjct 4157708 CCAGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGG 4157767 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||| || ||||| || ||| | || | || || || |||| | Sbjct 4157768 GAATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAA 4157827 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | ||| ||||| || | || || || || |||||||| Sbjct 4157828 CCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 >seq1932 Length=4064500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || || || || |||| || | | |||| || | ||| Sbjct 3414604 TGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTCGAGCTGC 3414663 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||||| | ||| || || || ||||||||||| || || || || || Sbjct 3414664 TTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTC 3414723 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||||| || || |||| || || ||||| Sbjct 3414724 GCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCTTCCCGGTA 3414783 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 3414784 AGGGTCTTCACGAAGATCTGCAT 3414806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396194340063585