Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq790 107 1e-18 seq5369 100 2e-16 seq2011 89.7 4e-13 seq3224 86.0 5e-12 seq2214 86.0 5e-12 seq2370 84.2 2e-11 >seq790 Length=1848252 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || || || || | ||| | ||| | || || | ||||| || ||||| Sbjct 1588421 CTCCTTTTGGATGTTATAGTCCGCAAGAGTGCGACCATCTTCAAGTTGCTTCCCAGCAAA 1588362 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| ||||||| ||||| ||||||||||| ||||||| ||| ||| Sbjct 1588361 GATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCTTTGACATT 1588302 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| || || || || || ||||| ||||| || Sbjct 1588301 ATCGATGGTATCAGAACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTTTTCAC 1588242 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 1588241 AAAAATCTGCAT 1588230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||||| || || ||| ||| || ||||| ||||| |||| Sbjct 1588229 GCCACCCCTCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 1588170 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| | || || | |||||| || ||||| ||||| | ||| || || | ||| Sbjct 1588169 AAGGGTTCTCCCATCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1588110 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||| || || ||| | | | || || ||| || Sbjct 1588109 AATACCCTCCTTGTCCTGAATTTTCGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGAC 1588050 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || ||||| || || |||| || || ||||| |||||||| Sbjct 1588049 CTCAAGGGTGATCGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 1588002 >seq5369 Length=1591519 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||||| || || || ||| || ||||| ||||| |||| Sbjct 1426776 GCCACCCCTAAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGC 1426835 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| | || || | |||||| || ||||| ||||| | ||| || |||| ||| Sbjct 1426836 AAGGGTTCTCCCATCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGG 1426895 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||| || || ||| | | || ||||| ||| || Sbjct 1426896 AATACCCTCCTTGTCCTGAATTTTCGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAAC 1426955 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || |||| || || || || |||||||| Sbjct 1426956 CTCCAAAGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 1427003 >seq2011 Length=5003947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || ||||||||||||| || | || |||| || | |||| Sbjct 3036700 TGAAGGGTGGACTCTTTCTGGATATTGTAATCAGCGAGGGTGCGCCCGTCTTCAAGCTGC 3036759 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || | || || || | || | ||||||||||| ||||||| Sbjct 3036760 TTTCCTGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATCCCCTCCTTGTCCTGAATCTTT 3036819 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | ||||| ||||||||| | |||||| ||||| || ||| Sbjct 3036820 GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGCGTAATAGTTTTCCCTGTC 3036879 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || || || ||||||||| Sbjct 3036880 AGGGTCTTGACGAATATCTGCATC 3036903 >seq3224 Length=4215183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||||| ||||| | ||| | || ||||| ||| || || || ||||| || | Sbjct 2572709 CGCCGCCCCGGAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 2572768 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| |||||||| || || ||||| || |||| || Sbjct 2572769 CGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGG 2572828 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || ||| | | | || | ||| | Sbjct 2572829 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCGCTGGACTCAA 2572888 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || ||||| || ||||| | || || || || ||||||||| Sbjct 2572889 CCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATC 2572938 >seq2214 Length=9977371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||||| ||||| | ||| | || ||||| ||| || || || ||||| || | Sbjct 6800397 CGCCGCCCCGGAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 6800456 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| |||||||| || || ||||| || |||| || Sbjct 6800457 CGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGG 6800516 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || ||| | | | || | ||| | Sbjct 6800517 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCGCTGGACTCAA 6800576 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || ||||| || ||||| | || || || || ||||||||| Sbjct 6800577 CCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATC 6800626 >seq2370 Length=1017971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||||| || | || |||| || | ||| Sbjct 237601 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCCTCGAGTTGC 237542 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || |||| || | ||||||||||| ||||| Sbjct 237541 TTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTA 237482 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || |||| ||||||||| | || ||||| || |||||| Sbjct 237481 GCCTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTC 237422 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || || || ||||||||| Sbjct 237421 AGGGTCTTCACGAAGATCTGCATC 237398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380856794206815