Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4293 122 1e-22 seq3240 111 2e-19 seq6319 93.3 5e-14 seq4399 93.3 5e-14 >seq4293 Length=5823730 Score = 122 bits (134), Expect = 1e-22 Identities = 120/154 (78%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATT 163392 ||||| || |||||||| |||||||||| || ||||| |||| || || || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGT---GTAATA 2155200 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| ||||| |||||| | || |||||||||||||||||||| || ||| Sbjct 2155199 AATACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGT 2155140 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 |||||||| |||||||| || ||||| ||||||| Sbjct 2155139 AATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 111 bits (122), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 |||||||| ||||| | ||| | |||||||| |||||||| || |||||||| ||| Sbjct 808438 ATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 808497 Query 163357 AACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| || ||||| |||| || || ||| ||||||||| ||||| || Sbjct 808498 AACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACTTGGGCTGATATTATT 808554 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAA 163454 ||| | || |||||||||||||||||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq6319 Length=5966559 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 163061 GTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTA 163120 |||||||||| ||||| || || ||||||||||| ||||| | || || ||| | | | Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 163121 TCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAG 163180 |||| ||||| || || | || | || | ||||| | ||||| ||||| |||| Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 163181 AGACTTACAACATTGTTGCTGCTCATGG--ATACTTTG 163216 | ||||| || || || ||||||||||| || ||||| Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTATTCTTTG 1421087 >seq4399 Length=3202280 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446 || ||| ||||||||| ||||| ||||| | | |||||||||||||||||||| Sbjct 214280 GTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCAT 214221 Query 163447 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 || ||||||||||| |||||||| || ||||| |||||| Sbjct 214220 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552964469488200