Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4399 248 2e-60 >seq4399 Length=3202280 Score = 248 bits (274), Expect = 2e-60 Identities = 576/861 (67%), Gaps = 18/861 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || || ||||| |||||||| |||||||| | || ||| || ||| Sbjct 383753 CTGGTACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCAGCGATATCAGCTC 383812 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG--GCCCATCTGTTCCAGC 47956 ||| || ||||||||||| | || |||||| | | | ||||| | ||||| Sbjct 383813 CATCCAGTCGAAGGGGTTGGCCGCGTCGTACACC--TTCCCGCAGCCCAACGCCACCAGC 383870 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | ||||| ||| |||| ||||| | ||||||| | |||||| || | || Sbjct 383871 AGCCGGTCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGC 383930 Query 48017 GA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| || || | | ||||||| |||| |||| ||| || |||| ||| || Sbjct 383931 GCGCACGG-CAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTCCCGCACTAT 383989 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||| || ||| | | || || ||| | || |||| || |||||| Sbjct 383990 CGACTTCACTTTCTCCTCGCTGAGCTTCGACCGGAGGAG---GGAGTAGATCAGGCAGGC 384046 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| | || ||||||| ||| ||| |||| |||||| ||| || || Sbjct 384047 GAAGTCGCAGTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGG 384106 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | ||||| || || |||||||| || || ||| || ||||||||||| || Sbjct 384107 CATCAGCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCC 384166 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| || || || | | |||||| |||| || || ||| |||||| Sbjct 384167 CTCCACGCAGGCAAATGCAATCACCCTCTCCGCGAACGACTCGGAGCCGTC---GATCCA 384223 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA--- 48372 | ||||| || ||||||||||| | ||| || | ||||| || |||||||| Sbjct 384224 CTGCATGGCCCACTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGCCCGGAACAG 384283 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | | ||| ||| | | |||| | ||||| ||| ||| ||||||||| Sbjct 384284 GCGGTCCTT---CTCGGCGGAGTCCTTGATGTAGGTCTCGAGGAGCAGACTGTACATCTC 384340 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| || |||||||| | |||||| | | ||| Sbjct 384341 GGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGAGATCTG 384400 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | ||| | | || ||||| ||| ||||| || || || || || Sbjct 384401 GACCTCCTTCATGAACCGGGCGGCGAGGTTCTCGAGGACGATCCCGTCAGAGGCGGCGAA 384460 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||| || |||| ||| | | ||||||||||||| | ||| ||| | |||| | Sbjct 384461 GAAAGCGAGGATATGGGTGACGAAATGGCGCTCGCCGGAGGTTAGATTCTCCCAGTGGCG 384520 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 ||| | | |||||||| || ||| | ||||||||||| || || || ||||| Sbjct 384521 GGTGTCCTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTA 384580 Query 48673 CATGCCCCATATGTCCGGATA 48693 ||| |||| | || ||||| Sbjct 384581 CATTTCCCACACCTCGGGATA 384601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931330133395200