Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4399 226 5e-54 >seq4399 Length=3202280 Score = 226 bits (250), Expect = 5e-54 Identities = 559/848 (66%), Gaps = 18/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||||| |||||||||||||| | ||| |||||| || || ||| | || || || Sbjct 384589 TGGGAAATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCC 384530 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 |||||| | |||| | |||| || | ||||| ||||| ||| | | Sbjct 384529 CAGGACACCCGCCACTGGGAGAATCTAACCTCCGGCGAGCGCCATTTCGTCACCCATATC 384470 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| || |||||||| || || || |||||| || || | |||| Sbjct 384469 CTCGCTTTCTTCGCCGCCTCTGACGGGATCGTCCTCGAGAACCTCGCCGCCCGGTTCATG 384410 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||| || ||| | |||||| ||||| || |||||||| ||||| || || Sbjct 384409 AAGGAGGTCCAGATCTCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCCATTGAGAAC 384350 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGA 25779 | ||||| ||| |||| ||| || ||| ||||| | ||| |||||||| Sbjct 384349 ATCCACTCCGAGATGTACAGTCTGCTCCTCGAGACCTACATCAAGGACTCCGCCGAGAAG 384290 Query 25780 GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCC 25839 || || ||||| | || |||||| | | ||| || | |||| ||||||| ||||||| Sbjct 384289 GACCGCCTGTTCCGGGCGATCGAGACCGTCCCCTGCGTGAAGAAGAAGGCGGAGTGGGCC 384230 Query 25840 ATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TG 25897 ||| |||||||| || || | ||| |||| | ||| || || | || ||||| || Sbjct 384229 ATGCAGTGGATCGACGGCTCCGAGT----CGTTCGCGGAGAGGGTGATTGCATTTGCCTG 384174 Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957 | |||||||| ||||| ||| ||| || |||||||||||||| ||| || || Sbjct 384173 C-GTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGGG 384115 Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017 || ||||| ||||| ||| || |||||||| ||| ||||||||||| |||||| Sbjct 384114 GGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCACT 384055 Query 26018 GAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC--ACAAACCTTCTC-AAGAGA 26074 | || || ||||||||| ||||| | | | |||| | || || | | |||| Sbjct 384054 GCGACTTCGCCTGCCTGATCTACTC------CCTCCTCCGGTCGAAGCTCAGCGAGGAGA 384001 Query 26075 CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNN 26134 || | || | || || ||||||||||||| ||||||| Sbjct 384000 AAGTGAAGTCGATAGTGCGGGACGCGGTGGAGATCGAGAGGGAGTTTGTATGCGACGCGC 383941 Query 26135 NNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGG 26194 |||| |||||| | |||||| | || ||||| |||| |||| Sbjct 383940 TGCCGTGCGCGCTGGTGGGGATGAACGGCGACCTCATGGGGCAGTACATAGAGTTCGTGG 383881 Query 26195 CCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 | |||| ||||| ||| | | |||| || | | ||| || | ||||| ||| Sbjct 383880 CGGACCGGCTGCTGGTGGC-GTTGGGCTGCGGGAAGGTGTACGACGCGGCCAACCCCTTC 383822 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 |||| ||||| |||||| || ||||||||||||||||||| || ||||||||||| Sbjct 383821 GACTGGATGGAGCTGATATCGCTGCAAGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGG 383762 Query 26314 GACTATCA 26321 || || || Sbjct 383761 GAGTACCA 383754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928642718203200