Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2507 132 5e-26 seq4293 93.3 4e-14 seq3240 93.3 4e-14 >seq2507 Length=3123735 Score = 132 bits (146), Expect = 5e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 10590 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 10649 ||||||| || | ||| | |||| | || ||||| | | ||||| ||||| || | Sbjct 2652331 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 2652272 Query 10650 TTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709 | ||||| || || || || || || |||||| | || | ||||||||||||||||| | Sbjct 2652271 TACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAA 2652212 Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTG 10769 | ||||| || || ||||| || | ||||||||| ||||||| |||||||| | | Sbjct 2652211 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 2652152 Query 10770 ACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || || || |||| | || | |||||||| || ||||| || Sbjct 2652151 ATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACC 2652109 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 10326 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATAC 10385 |||| || |||||||||||||| | | || || ||||||||||| ||||||||| || Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 10386 TGGGAGGGGC-GCTC--CTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC 10442 |||| | || |||| |||| || ||||| || | || ||||||| || | | | Sbjct 2014015 TGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 10443 AAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCT 10502 ||||||| || ||||| || ||| |||||| | ||||||| ||| | || | Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 10503 ATTCGATGGTTACTGCTAA 10521 |||| |||| |||||||| Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9085 AACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAAC 9144 ||||| ||||| ||||| |||||||| | | | || | ||||| || || | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 9145 ACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAAC 9204 || ||||| || | ||||||||||| || ||||||||||| ||||| ||| | || Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 9205 GCACACAACTTCCCGCTTGACCTTGCGGCTG 9235 || || |||||||| || ||||| || |||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 9043 GGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAAC 9102 || ||||||||||| || | || || || |||||||||||||| ||||| ||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 9103 TTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTT 9162 |||||||| || | | || | ||||| || || | || || ||||| || | || Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 9163 AACCGCGCAGGACTCGGTATGGAAGTCATGCACGAA 9198 |||||||| || ||||||||||| ||||| ||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAA 808590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516367633320000