Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5369 114 8e-20 seq1810 109 4e-18 seq790 109 4e-18 seq666 104 2e-16 seq2011 98.7 6e-15 seq5554 96.9 2e-14 seq5370 96.9 2e-14 seq4864 95.1 8e-14 seq1287 87.8 1e-11 seq813 87.8 1e-11 >seq5369 Length=1591519 Score = 114 bits (126), Expect = 8e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| ||||| |||||||| || || |||||||| ||||||||||| | | || Sbjct 1427509 TTATAGTCAGCAAGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTCTGC 1427568 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||||||||||||||||||||| || ||| ||||| |||||| Sbjct 1427569 TGGTCCGGGGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCA 1427628 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | || || || || || ||||||||||| ||||| || |||||||| Sbjct 1427629 GAGCTCTCTA-CCTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTTG 1427684 Score = 93.3 bits (102), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 ||||| || || || ||||| ||||| | |||||||| || | || | | | Sbjct 1427701 CGGAGGACCAGGTGGAGTGTGGACTCTTTCTGGATGTTATAATCGGCCAAGGTGCGGCCA 1427760 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || || || || |||||||| |||||| Sbjct 1427761 TCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTG 1427820 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| || || || || | | | | || | |||||||||| Sbjct 1427821 TCCTGGATCTTGGCCTTTACATTATCGATGGTGTCGGAGCTCTCAACCT-CAAGGGTAAT 1427879 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| ||||| ||||| Sbjct 1427880 GGTCTTACCAGTAAGGGTCTTTACGAAGATTTG 1427912 >seq1810 Length=4673341 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| ||||| || || || ||| | ||| | | |||||||| || | | Sbjct 4156743 ACGAAGACGGAGGACAAGGTGGAGAGTCGACTCTTTTTGG--ATGTTATAATCTGCCAAA 4156800 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| | ||| || || || || |||||||| || || | ||| || ||||| || ||| Sbjct 4156801 GTTCGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATT 4156860 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTC 480727 || |||||||| ||||||||| |||||| ||||| ||||| | | | | || | | Sbjct 4156861 CCCTCCTTGTCCTGAATCTTTGTCTTGACATTATCAATGGTATCGGAGCTTTCAACCTCC 4156920 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || ||||| || || || || Sbjct 4156921 AA-CGTGATGGTCTTTCCAGTAAGCGTCTTGACAAAGATCTG 4156961 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||||||||| || || || ||| || || ||||| |||||||| || || | || Sbjct 4157926 TTATAATCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGC 4157985 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATC 480712 || || || || ||||||||||| || || || |||||| || ||| ||||| || || Sbjct 4157986 TGGTCTGGGGGGATTCCTTCCTTATCCTGGAT-TTTTGTCTTCACATTGTCAATTGTGTC 4158044 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||||||||| || || || ||||| |||||||| || ||||| Sbjct 4158045 TGAGCTTTCGACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTAACAAAGATTTG 4158101 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || || | |||||| || ||| || | ||| || || || ||||||| Sbjct 4157203 AGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTGCAAGAGTTCGC 4157262 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||||||||| | ||||| || ||||| ||||||||| Sbjct 4157263 CCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAGGGATTCCTTCC 4157322 Query 480675 TTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 ||||| || || ||| || || ||| ||||| || || | | || ||||| Sbjct 4157323 TTGTCCTGGAT-TTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGACCTCCAGGGT 4157381 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| || || || |||||||| Sbjct 4157382 AATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTG 4157417 >seq790 Length=1848252 Score = 109 bits (120), Expect = 4e-18 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| ||||| ||||| || ||| ||| || ||||| || || ||| Sbjct 1588451 ACGGAGACGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATG--TTATAGTCCGCAAGA 1588394 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||||||||||||||| |||||||| || || | || ||||| || ||||| Sbjct 1588393 GTGCGACCATCTTCAAGTTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATA 1588334 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 || |||||||| ||||||||| ||||||| || || ||||||| Sbjct 1588333 CCCTCCTTGTCCTGAATCTTTGCTTTGACATTATCGATGGTATCAG 1588288 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| ||||| ||||| || || ||||||||||| ||||||||||| | | || Sbjct 1587724 TTATAGTCAGCAAGAGTCCTTCCGTCCTCAAGTTGCTTGCCAGCAAAAATCAACCTCTGC 1587665 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || |||||||||||||| |||||||| || ||| ||||| || || Sbjct 1587664 TGGTCCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATGGTGTCC 1587605 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | | ||| ||| || || || || ||||| ||||||||||| || || Sbjct 1587604 GAGCTCTCCACCTCCAA-GGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATCTG 1587549 >seq666 Length=4378875 Score = 104 bits (114), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 12/194 (6%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | || || || || || || ||||| ||||| ||||||||||| || |||| Sbjct 133626 ATGCAGTTGTCACGGTCCCTGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAGGATG 133567 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || || |||||| | ||||| || ||||| || || || || || Sbjct 133566 CTGGCGTGATTGCTGGGCTCAATGTTATGCGTATCATCAATGAGCCCACTGCTGCTGCTA 133507 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA---------AGAAGTAAATGTTTTAATCT 474905 |||| ||||| ||||||||||| | ||| | ||||| ||||| || |||| Sbjct 133506 TTGCCTATGGCCTTGATAAGAAGGC-GACCAGCTCGGGGGAGAAG--AATGTGTTGATCT 133450 Query 474906 TTGATTGTGGAGGT 474919 ||||| |||||| Sbjct 133449 TTGATCTCGGAGGT 133436 >seq2011 Length=5003947 Score = 98.7 bits (108), Expect = 6e-15 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||||||| || || || ||| ||| || || |||||||| ||||| || || || || Sbjct 3036951 ATTATAATCCGCCAGGGTCCTGCCATCATCGAGCTGCTTTCCGGCAAAGATCAGCCGCTG 3037010 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| |||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 3037011 CTGATCCGGAGGAATACCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCAATCGTGTC 3037070 Query 480713 AGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | | | ||| || || || || ||||| |||||||| ||||| || || Sbjct 3037071 AGAGCTCTCGACCTCCAA-CGTGATCGTCTTGCCGGTTAGAGTCTTCACGAAGATCTG 3037127 >seq5554 Length=4157884 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 |||||||| |||| || ||||||||||| || | || || | || || || ||| Sbjct 322841 AAAATGAAGGAAACTGCAGAATCATATCTTGGGAAAACAATATCTAAAGCTGTTATCACT 322900 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| ||||| || ||| | || | |||||||| |||||||| ||| ||||||| Sbjct 322901 GTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCTGGACGAATTGCT 322960 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||||| |||| | || || ||||| || || || || || || | ||||| Sbjct 322961 GGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTCTCATATGG 323016 >seq5370 Length=1890397 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 |||||||| |||| || ||||||||||| || | || || | || || || ||| Sbjct 1737517 AAAATGAAGGAAACTGCAGAATCATATCTTGGGAAAACAATATCTAAAGCTGTTATCACT 1737458 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| ||||| || ||| | || | |||||||| |||||||| ||| ||||||| Sbjct 1737457 GTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCTGGACGAATTGCT 1737398 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||||| |||| | || || ||||| || || || || || || | ||||| Sbjct 1737397 GGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTCTCATATGG 1737342 >seq4864 Length=2010500 Score = 95.1 bits (104), Expect = 8e-14 Identities = 129/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 475985 TTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGA 476044 || ||||| ||||||||||| ||| | ||| |||||| ||| |||||| || ||| Sbjct 1233818 TTCTCCACCTATTCTGATAACCAACCTGGAGTATTGATCCAAGTCTATGAAGGAGAGAGA 1233759 Query 476045 AAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCT 476104 | || ||||| || ||| ||||||| || | || ||| || ||||||||| Sbjct 1233758 GCACGGACCAAAGACAACAACCTCCTTGGAAAATTCGAGCTCACAGGCATCCCTCCTGCT 1233699 Query 476105 CCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAA 476163 || ||||| || || ||||| | || |||||||||||||| ||||| | |||||| Sbjct 1233698 CCAAGAGGTGTACCACAAATCAATGTGTGCTTTGATATTGATGCGAATGGCA-TCTTAA 1233641 >seq1287 Length=5097827 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || |||||||| ||| | |||||||||||||||||| | ||| Sbjct 1660414 ACAGTGCCAGCTTACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCGGGTCGGATT 1660473 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||| | | ||| | || || || |||||||| || || || | || |||||||| Sbjct 1660474 GCCGGTTTGGAAGTTCTCCGGATCATCAATGAACCTACTGCTGCATCCCTGGCTTATGGG 1660533 Query 474866 CTTGATAAGAA 474876 |||| ||||| Sbjct 1660534 TTTGAGAAGAA 1660544 >seq813 Length=2976281 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || || ||||| || ||| | || || ||||| ||||| ||| ||| Sbjct 1797432 ACGGTTCCTGCCTACTTCAATGACTCCCAAAGGCAGGCCACTAAGGATGCTGGAGTGATT 1797373 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| || || | || || || |||||||| || || || || |||| |||||| Sbjct 1797372 GCTGGTCTGAACGTGATGCGCATCATCAATGAACCCACCGCTGCAGCTATTGCCTATGGT 1797313 Query 474866 CTTGATAAGAA 474876 ||||| ||||| Sbjct 1797312 CTTGACAAGAA 1797302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267432615100940