Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq4293 138 1e-27 seq3240 123 3e-23 seq4399 95.1 1e-14 seq813 93.3 5e-14 seq2492 91.5 2e-13 >seq4293 Length=5823730 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| | | | ||||||||||| ||| || || || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || ||||| || |||| ||||| ||| ||||| |||||||| ||||| || || ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTG 161863 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 161671 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAAC 161730 || |||||||| ||||| | || | ||||| ||||| |||||||| ||||||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 161731 TTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTC 161790 |||||||| ||| | ||||||||||| ||| || || || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 161791 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAA 161831 ||||| ||| ||||| |||||||| ||||| || || || Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 161746 GTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTT 161805 ||||||||||| ||| || || || || ||||| || || | ||||| | | ||| Sbjct 214298 GTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTT 214239 Query 161806 GGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 || |||||||| ||||| || || |||||||| ||||||||||| ||||| |||||| Sbjct 214238 GGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq813 Length=2976281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158331 AGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTG 158390 ||| || || |||||||||||| | || ||| | |||||||| || ||| ||||| || Sbjct 2806609 AGAGGATCAATACATCCTTGACTCGGCCGAGAATGCGGGTGTTGAGCTCCCCTACTCATG 2806668 Query 158391 CCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAG 158450 |||||| || || || ||| | ||||| || | | || || || ||| |||||| Sbjct 2806669 CCGTGCTGGAGCATGCTCGACCTGTGCAGGCCAGATGGTGTCAGGTTGCGTGGACCAATC 2806728 Query 158451 CGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTC 158510 ||| || ||||| ||||| | || || || || | | || || ||||| || Sbjct 2806729 AGACGGCTCATTCCTCGACGACAAGCAGATGGAGAAGGGCTATGTCCTCACCTGTGTCTC 2806788 Query 158511 TTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTA 158561 || || | ||||| |||||| | || ||||||||||||| || || Sbjct 2806789 ATACCCGAAGGCCGATTGCGTGATTCACACCCACAAGGAAGAGGATCTCTA 2806839 >seq2492 Length=5361119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 162366 CAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCAC 162425 ||||| || || | || ||||| ||| | || || || ||||||||||| || |||||| Sbjct 375400 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 375459 Query 162426 GGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGG 162484 || || || | ||| |||||||||||| | || || |||||||| || ||| || || Sbjct 375460 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 375519 Query 162485 TATTCGTCCTTACAATGCTATTGC 162508 | | || ||||| ||||| || || Sbjct 375520 T-TGCGACCTTATAATGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547628030749800