Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4293 105 2e-18 seq4399 84.2 7e-12 seq3240 84.2 7e-12 >seq4293 Length=5823730 Score = 105 bits (116), Expect = 2e-18 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 2155110 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 2155169 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| || | |||||||| ||| || || | ||| | | | |||||| Sbjct 2155170 AGCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAA- 2155228 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATT 17980 |||||||||| ||||| ||||| || || Sbjct 2155229 --ATTGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 7e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 214179 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 214238 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTA 17921 ||||||| | | ||| | | |||||||| ||| Sbjct 214239 AAGGTTAACGCGGTTAATAATATCAGCCCAAGTA 214272 >seq3240 Length=2626545 Score = 84.2 bits (92), Expect = 7e-12 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 17862 TTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTA 17921 ||||| || ||||||||||| | ||||||||||| | ||| | | |||||||| ||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 17922 GGTACGACTTGTCCT---CCAGCTGCTACAATGGATTGGTTGAAGTTGAATCCATTGAGA 17978 | || | ||| | | | ||||| ||||||||||| ||||| ||||| || Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACA---GATTGGTTGAAATTGAAACCATTTAGG 808479 Query 17979 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019 || |||||||||||| ||| || | || |||| ||| || Sbjct 808478 TTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 808438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151287124851070