Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq4293 123 3e-23 seq3240 123 3e-23 seq6319 104 3e-17 seq4399 96.9 4e-15 seq2507 84.2 3e-11 >seq4293 Length=5823730 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||||||||| |||| || ||||| || || | |||||||| |||| ||||| | Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTA 2155225 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTT 103320 | |||||||| ||||| || || ||||| Sbjct 2155226 CAAATTGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 103202 TTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTG 103261 ||||| || ||||| ||||||||||| || ||||||||| | || || ||||| || Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 103262 TTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTG 103321 || | |||||||| |||| ||||| | || |||||||| ||||| || || |||||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 103322 AACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACC 103362 || ||||| ||||| | ||| | || || ||||||||||| Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq6319 Length=5966559 Score = 104 bits (114), Expect = 3e-17 Identities = 128/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 103424 TGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCT 103483 |||||| ||||| ||| ||||||||||| |||||||| || || || ||||||||| Sbjct 1421079 TGGAAGGTCAAA-----GAA-TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCT 1421132 Query 103484 TGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGA 103542 || ||||| ||||||| | || | ||||| |||| || || || | || | | | | Sbjct 1421133 TGCCCGAATCTGTAACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1421192 Query 103543 GGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGAC 103593 || || || | ||||| |||||||||||||| || ||||| ||||| || Sbjct 1421193 -GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 1421242 >seq4399 Length=3202280 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAA 103286 | ||||||| | || || ||||| || || | |||||||| |||| ||||| Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAA 214297 >seq2507 Length=3123735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 102016 TTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTG 102075 || || || |||| ||||||||| | ||| |||| || | | || || ||| || Sbjct 2013877 TTAGCAGTGACCACTGAATAAGTTTTTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTA 2013936 Query 102076 TTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGAC 102135 ||||| ||||||||||||| | | ||| || || | || |||| ||||| || | Sbjct 2013937 TTTGCACCATCACCATCTTCAAATACAGTATTTTCTATTGTAGCACCATGGATAGCGCAT 2013996 Query 102136 AGCAG---TGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTC 102192 || || || | |||| | ||| ||||| ||||||||||| |||||| | | ||| Sbjct 2013997 AGTAGAGCAGCAGCGCCCAATACACCAGCAACCCCCATCATATGAAATGGGCTCAATGTC 2014056 Query 102193 CAGTTATGGAAGCCCTG 102209 || ||||| || || || Sbjct 2014057 CAATTATGAAACCCTTG 2014073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633375771197400