Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3240 100 8e-17 seq4293 96.9 1e-15 >seq3240 Length=2626545 Score = 100 bits (110), Expect = 8e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 21498 TTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTG 21557 || || |||||||| || || | |||||||| || ||||||| ||| |||||||| || Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 21558 TTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTG 21617 || || || | || | | | | | | ||||||||| || ||||||||||| | |||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 21618 AAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTA 21660 |||||||| || | || | |||| |||||| ||||||| Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTA 808433 >seq4293 Length=5823730 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 2155111 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2155170 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||||||| |||||||| || || || || | || | | | | | | | || Sbjct 2155171 GCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAAAT 2155230 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTT 21616 ||||| || ||||||||||| | ||| Sbjct 2155231 TGGTTGAAATTGAAACCATTTAGGTT 2155256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146177781090900