Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4293 102 9e-17 seq3240 96.9 4e-15 seq6103 95.1 1e-14 seq4399 84.2 3e-11 >seq4293 Length=5823730 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 2155111 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2155170 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| |||| |||| |||| || | | || | | |||||| || || Sbjct 2155171 GCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAAAT 2155230 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTT 124194 ||||| || ||||||||||| | ||| Sbjct 2155231 TGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 124081 TTCATGCATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGAC 124140 ||||||||||||||||||||| | ||| || | ||| | || |||| |||| || | Sbjct 808590 TTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAAT 808531 Query 124141 GATTTTTCCGTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGC 124200 | || | | |||||| || |||||||| || ||||||||||| | |||||| || Sbjct 808530 TACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGC 808471 Query 124201 CATTGTGCAGATACCCATAGAGGTTAACCATACACATA 124238 ||| |||| |||||| | || || ||||| | || || Sbjct 808470 CATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTA 808433 >seq6103 Length=2400612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| | || || | || || ||||| | || || | || Sbjct 1876097 CATGGCCTCAGCCGCAGCAGTACCCTCGTCGAGGAGGGACGCGTTGGACATCGGCAGGCC 1876038 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCT-TCCAATCTTCCCTGAGATA 139977 || || || ||||| | || ||| |||||| | ||| |||||||| |||||||| | Sbjct 1876037 GGTGAGATCAGTGATCACGGTCTGGAAATTGAGCAG-GCTCTCCAATCTGCCCTGAGAGA 1875979 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 |||| || |||||||||||||| ||||||||| ||| ||||| | | ||| | | Sbjct 1875978 TCTCGGCCTGATAGGGAGTGTACTGAGTGTACCAAGCAGGGTTCTCCATGATGTTCCTCA 1875919 Query 140038 GTATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 | || || || || || | ||| || || || || Sbjct 1875918 GGATCACCGGCGGCGTGAAGGTGCCGTAATAGCC 1875885 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 214186 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 214245 Query 124109 GCTCTGTTTAGAACATCACCCCATGT 124134 | | ||| | || |||| |||| || Sbjct 214246 ACGCGGTTAATAATATCAGCCCAAGT 214271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578872431660600