Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3240 87.8 2e-12 seq2492 86.0 8e-12 >seq3240 Length=2626545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26766 TTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAG 26825 ||| || || || || | ||||| ||| ||||| | || || |||||||| || | Sbjct 808590 TTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAAT 808531 Query 26826 CACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGC 26885 |||||||| || ||||| ||||| || ||||| |||||||| || || |||||||| Sbjct 808530 TACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGC 808471 Query 26886 CATCGTGGATACACCAAGTGCGGTGAACCAGATGCC 26921 ||| ||| | ||| | || || |||||||| || Sbjct 808470 CATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq2492 Length=5361119 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| ||||||||||| |||||||| ||| | || || |||||||||||| Sbjct 375509 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCA 375450 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTG 24154 ||||| | ||| || || || | ||| ||| || ||| || ||||| Sbjct 375449 ACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTG 375400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665349613374600