Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4399 113 5e-20 seq3953 113 5e-20 seq281 93.3 5e-14 seq2214 89.7 6e-13 seq2495 84.2 3e-11 >seq4399 Length=3202280 Score = 113 bits (124), Expect = 5e-20 Identities = 145/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGA 65078 ||||||||||| | ||||| ||| | ||| | ||| | ||| || ||||| || Sbjct 384249 AGAAGAAGGCGGAGTGGGCCATGCAGTGGATCGAC-----GGCTCCGAGTCGTTCGCGGA 384195 Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTAT 65138 | | | |||| ||||| || |||||||| ||||||||||||||| ||||| || || Sbjct 384194 GAGGGTGATTGCATTTGCCTGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCAT 384135 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| ||||||||||||| || ||||| || || |||||| || || || || || Sbjct 384134 CTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTC 384075 Query 65199 CCGAGATGAGGGTCTCCAC 65217 | || ||||| |||||| Sbjct 384074 GAGGGACGAGGGACTCCAC 384056 >seq3953 Length=3923179 Score = 113 bits (124), Expect = 5e-20 Identities = 271/410 (66%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || || || ||| | ||||| || | | || | ||||||| || || ||| Sbjct 3432577 GTTGAGTTCCTGAAGAAGCCCGAAAGGTTTACTGCAGTTGGTGCCCGAATTCCTAAAGGT 3432636 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | ||| || || || ||||| || || |||||| || || || ||| Sbjct 3432637 GTACTTCTAGTTGGTCCTCCTGGAACTGGAAAAACTCTTCTCGCCAAGGCAATTGCTGGT 3432696 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| ||||| || ||| | | | || || ||||||||||||||| Sbjct 3432697 GAAGCTGGTGTTCCATTTTTCTCCATCTCCGGTTCTGAGTTCGTTGAGATGTTTGTTGGT 3432756 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || ||||| ||||| || | | ||| || ||| || || ||| Sbjct 3432757 GTTGGTGCGTCTAGAGTTCGTGATCTGTTCAAGAAAGCCAAAGAGAATGCCCCTTGCATT 3432816 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCA 175536 || || ||||||| |||||||| || || |||| | | |||| | || | Sbjct 3432817 GTGTTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGGGGAACTGGAATTGGCGGAGGA 3432876 Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAAT 175596 ||||| || || || || || ||||||| || | || ||||||||||| || || Sbjct 3432877 AATGATGAAAGGGAGCAGACTCTTAATCAGCTCTTGACAGAGATGGATGGATTCGAGGGA 3432936 Query 175597 GAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || | |||||||| || ||||| || | |||||||| || Sbjct 3432937 AACACTGGTATCATTGTTATTGCTGCAACTAACCGTGCCGATATCCTCGA 3432986 >seq281 Length=1258992 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 || |||| || | || ||||||||| | ||||||||||||| | || |||| || Sbjct 240406 CGAGACTTCGACTATGATTACTTTGGGTTTAAAACCCTTGAGAGGTCTTACCTCTTGAA- 240348 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | || |||| | || ||| ||||||| ||| |||| || | || | Sbjct 240347 -GGTCCAGGGGAAGGTCGTGGAGAGACCCCAGCACATGTTGATGAGGGTTGCTGTTGGAA 240289 Query 75246 TCCACGGGGAAGACATTGATTCTGTC-TTGGAGACATACGACAAGATGTCCCAAGGTATG 75304 |||| ||| |||||||| |||||| || || || || | | |||||| || | | Sbjct 240288 TCCATAAGGATGACATTGACTCTGTCATTAGA-ACCTATCATATGATGTCTCAGCGGTGG 240230 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 |||| ||| ||| | || || ||||| ||||| || ||||| || || ||| Sbjct 240229 TTCACTCATGCATCTCCTACGCTCTTTAATGCAGGAACACCGAGGCCCCAG 240179 >seq2214 Length=9977371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || ||||| || | || || ||| | || |||||| Sbjct 4795969 CCCGGAACCGGGAAGACCCTTCTAGCCCGGGCAGTTGCCGGCGAAGCTGGGGTTCCATTC 4795910 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | ||| | | || || ||| |||| || || || || || ||||| Sbjct 4795909 TTCTCTTGTGCAGCCTCGGAGTTCGTAGAGTTGTTCGTGGGAGTTGGAGCTTCGAGGGTC 4795850 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | ||| || || || ||||| ||||||||||||||| Sbjct 4795849 AGGGATTTGTTTGAGAAGGCCAAGTCGAAGGCTCCGTGCATTGTTTTCATTGATGAGATT 4795790 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| ||||| | ||| | | || || | | | || | ||||| ||||| || | Sbjct 4795789 GATGCTGTGGGAAGGCAGAGAGGGGCGGGTCTCGGAGGC--GGGAATGATGAGAGGGAGC 4795732 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || |||||||| || || || ||||||||||| || Sbjct 4795731 AGACCATTAATCAGCTCCTTACTGAGATGGATGGGTT 4795695 >seq2495 Length=1658871 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || |||| ||| | || ||| |||| || ||||| |||||| ||||||||| Sbjct 1091895 TTCTGTGCCATTTTCTGGCTCAAAAAGAGGGGACTGATGCCGGGCCTAACATTCTCAAAT 1091954 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || |||||||| || |||||||| |||||| || ||||| Sbjct 1091955 GAGCTTATTTCTCGGGATGAGGGCCTCCACTGCGACTTTGC 1091995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596439808826400