Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3240 95.1 1e-14 seq6319 93.3 5e-14 seq4293 84.2 3e-11 >seq3240 Length=2626545 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 7923 TTCATGCATAACTTCCATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGA 7980 ||||||||||||||||||||| | ||| || | ||| ||||| ||| |||| ||| | Sbjct 808590 TTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATA--TCAGCCCAAGTATTA 808533 Query 7981 ATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAAT 8040 || | ||| | | |||||| || |||||||| || || || || || ||||| || Sbjct 808532 ATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAA 808473 Query 8041 GCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATA 8080 ||||| |||| ||||| | || ||| ||||| | || || Sbjct 808472 GCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTA 808433 >seq6319 Length=5966559 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 8156 CAAAGTAT--CCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATA 8213 ||||| || ||||||||||| || |||||||| || ||||| ||||| || || | || Sbjct 1421087 CAAAGAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTA 1421146 Query 8214 ACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGA 8273 ||| | || | | || | ||| || || || ||||| | | ||| || || || || Sbjct 1421147 ACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGA 1421206 Query 8274 ACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 ||| |||||||||||||| || || || ||||| Sbjct 1421207 ACCATGCATAGCACTGAATAGGGAACCGCCGAA 1421239 >seq4293 Length=5823730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 2155111 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2155170 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| || | ||| | | |||||| || || Sbjct 2155171 GCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAAAT 2155230 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTT 8036 ||||| || || || || || ||||| Sbjct 2155231 TGGTTGAAATTGAAACCATTTAGGTT 2155256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615728411436600