Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2507 159 4e-34 seq4293 141 1e-28 seq3240 132 5e-26 seq4399 111 2e-19 seq2500 95.1 1e-14 seq16698 93.3 5e-14 >seq2507 Length=3123735 Score = 159 bits (176), Expect = 4e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAG 167892 ||||||||||| || || ||||| || || |||||||| || |||||| | || ||||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 167893 GATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCA 167952 ||||| || |||||||||||||| || ||||| || || | || |||||| |||| || Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 167953 TGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCA 168012 ||| | || || ||||| |||||||| ||| || | ||||||||||| ||||| || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 168013 CGAGGCAACGCACTATAA 168030 || || ||||| || ||| Sbjct 2652107 CGTGGAAACGCTCTTTAA 2652090 Score = 109 bits (120), Expect = 6e-19 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 167525 TCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCC 167584 ||||||| || || || |||||| ||| ||||||||||||||||| || || ||| | Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 167585 TGGG---TGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATG 167641 |||| || ||| | || | || |||||||||| |||| |||| |||||| | | || Sbjct 2014015 TGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 167642 AAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTT 167701 |||||||||| ||||| || || || || | | ||||| | ||| | |||| Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 167702 ATTCAATGGTTACAGCAAA 167720 ||||| |||| || || || Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 141 bits (156), Expect = 1e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAAC 166725 || ||||| ||| |||||||||||||| || |||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 166726 GCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 || || |||||||| || ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | ||||| |||||||||| | ||||| |||||||||||||||| | || ||| Sbjct 2950142 CTCCCGTTGTTCCTTAGTAGCTCAGTGATAGAGCGATCGACTGTTAATCGACTAGTTGTA 2950083 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| || |||| Sbjct 2950082 GGTTCGAATCCTACTTGAGGAG 2950061 >seq3240 Length=2626545 Score = 132 bits (146), Expect = 5e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 166564 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 166623 || |||||||| || || | || || ||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 166624 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTT 166683 |||||||| || | ||||| |||| |||||||| | || || ||||| ||| || || Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 166684 AACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAA 166724 ||||||||| || |||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 166640 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCG 166699 ||||| |||| |||||||| | || || ||||| ||| || ||||||||| | || | Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 166700 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCT 166755 ||||||||||||||||||| ||||| || || |||||||| || ||||| |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2500 Length=93118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||| |||||||| Sbjct 57174 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGACTGGTCGTA 57233 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 57234 GGTTCGAATCCTACTTGGGGAG 57255 >seq16698 Length=814 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 811 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 752 Query 18188 CCTACCTGGGGAG--TTGTT 18205 ||||| ||||||| ||||| Sbjct 751 CCTACTTGGGGAGATTTGTT 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561125893482000