Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3240 105 2e-18 seq4293 102 2e-17 >seq3240 Length=2626545 Score = 105 bits (116), Expect = 2e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43084 GGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAAC 43143 || || ||||| ||| || | || |||| |||||||| || ||| | |||||||| || Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 43144 TTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTG 43203 || |||||||| | ||||||| ||| || ||| || |||||||||||||||| | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 43204 AATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAA 43244 || || || |||||||| | || || ||||| || || || Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 102 bits (112), Expect = 2e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 43126 AACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCT 43185 ||| | |||||||| || || ||||||| | ||||||| ||| || ||| || | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 43186 ACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAAT 43245 ||||||||||||||| | || || || |||||||| | || || ||||| || || ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 43246 GCACATAACTTCCCGCTTGATCTTGC 43271 || ||||||||||| || || || || Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143503134012940