Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq4293 111 5e-20 seq3240 102 2e-17 seq4399 80.6 8e-11 >seq4293 Length=5823730 Score = 111 bits (122), Expect = 5e-20 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 2155111 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2155170 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| ||||| || | | ||| ||||| | Sbjct 2155171 GCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACAAAT 2155230 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTT 26022 ||||| || || |||||||||||||| Sbjct 2155231 TGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 25904 TTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTA 25963 ||||| || ||||||||||| | || |||||||| ||||| | | ||||||||| ||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 25964 GGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTA 26023 |||| || | | ||| ||||| || ||||| || || |||||||||||||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 26024 AATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCC 26064 || ||||| |||| |||||| | || || | ||| || || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq4399 Length=3202280 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 214186 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 214245 Query 25937 GCTCGGTTTAATACATCAGCCCATGTA 25963 | ||||| | | ||||||||| ||| Sbjct 214246 ACGCGGTTAATAATATCAGCCCAAGTA 214272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147681470237600