Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4293 131 2e-25 seq3240 107 2e-18 seq6319 96.9 4e-15 seq4399 96.9 4e-15 >seq4293 Length=5823730 Score = 131 bits (144), Expect = 2e-25 Identities = 122/154 (79%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 ||||| || |||||||| |||||||| | |||||| || |||| ||| || || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGA---TAGTCAAGGTCGTGTAATA 2155200 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 ||| ||||| || ||||||||||||||| |||||||||||||| ||||| || ||| Sbjct 2155199 AATACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGT 2155140 Query 155923 AACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 || ||||| ||||||||||| ||||| ||||||| Sbjct 2155139 AATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 107 bits (118), Expect = 2e-18 Identities = 121/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 155767 ATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTC 155826 |||||| |||||| | ||| | || ||||| |||||||| || |||||||| ||| Sbjct 808438 ATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 808497 Query 155827 AACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTT 155883 ||||| |||||||| || |||| ||| || || ||| ||||| || ||| || Sbjct 808498 AACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 155884 AACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||||||||| |||||||||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq6319 Length=5966559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| | | Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || | | || | ||||||| ||||| ||||| |||| Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATA 155681 |||||||||| || || ||||||||||| || Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTA 1421094 >seq4399 Length=3202280 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || ||| ||||||||| | |||||||||||||| ||||| || ||||| Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| ||||||||||| ||||| |||||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584707961791800