Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4293 105 2e-18 seq3240 93.3 1e-14 seq4399 84.2 6e-12 >seq4293 Length=5823730 Score = 105 bits (116), Expect = 2e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | |||||||| ||||||||||||| || || ||| | | || |||| Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTA 2155225 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTT 40678 | | ||||| || || |||||||| ||||| Sbjct 2155226 CAAATTGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 93.3 bits (102), Expect = 1e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 40560 TTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTA 40619 ||||| || ||||| ||||||||||| || | | ||||| || ||||||||||||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 40620 GGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTA 40679 ||| || ||| | | || ||||| || ||||| || || |||||||| ||||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 40680 AAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAAT 40723 ||||||||||| ||||| | | |||| ||| || || || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTAT 808432 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 6e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGAC 40627 | | ||||| || ||||||||||||| ||| || Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGTATTAATTAC 214280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143672698959270