Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4293 113 5e-20 seq3240 102 9e-17 seq6319 96.9 4e-15 seq4399 84.2 2e-11 >seq4293 Length=5823730 Score = 113 bits (124), Expect = 5e-20 Identities = 118/154 (77%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAA 67473 | || | |||||| || || ||||||||| || || || |||| |||| Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGTATTTATTAC---ACGACCTTGACTATCAA 2155222 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTT 67507 | || |||||||||| |||||||| || ||||| Sbjct 2155223 CTACAAATTGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 102 bits (112), Expect = 9e-17 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 67389 TTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTA 67448 ||||| || |||||||||||||| ||||| || | ||||| || || ||||||||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 67449 GGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGG 67505 ||| || || |||| ||||| || ||||||||||| |||||||| || ||| Sbjct 808535 TTAATTAC---ACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGG 808479 Query 67506 TTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 ||||| |||||||| | ||| | ||||| |||||||| Sbjct 808478 TTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 808438 >seq6319 Length=5966559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 67632 TATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAG 67691 || ||||||||||| || || || ||||| ||||| ||||| ||||| ||||||| | Sbjct 1421094 TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAACCTTCA 1421153 Query 67692 TTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGC 67751 || | || | || || ||||| ||||| | | ||| || || | ||||| ||| Sbjct 1421154 TTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGC 1421213 Query 67752 ATAGCACTAAAGAGTGAACCACCGAATACAC 67782 |||||||| || || ||||| |||||||||| Sbjct 1421214 ATAGCACTGAATAGGGAACCGCCGAATACAC 1421244 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC 67456 | | ||||| || || ||||||||| ||| || Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGTATTAATTAC 214280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566823853549800