Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3240 123 3e-23 seq2507 123 3e-23 seq4293 120 3e-22 seq6319 93.3 5e-14 seq16698 91.5 2e-13 seq2500 91.5 2e-13 seq4399 84.2 3e-11 >seq3240 Length=2626545 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 67870 TTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTA 67929 ||||| |||||||||||||||||||| | ||||||||| | || || ||||| ||| Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 67930 GGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTG 67989 | || ||| |||||||| | ||| |||||||| ||||||||||| |||||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 67990 AATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACC 68030 || ||||| ||||| | ||| | ||||| ||||||||||| Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq2507 Length=3123735 Score = 123 bits (136), Expect = 3e-23 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 66897 TTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTG 66956 || ||||| |||| ||| ||||||| ||| ||||||| | || || || ||| || Sbjct 2013877 TTAGCAGTGACCACTGAATAAGTTTTTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTA 2013936 Query 66957 TTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAA 67016 ||||| |||||||||||| | | |||||| |||| |||| ||||||| || || | Sbjct 2013937 TTTGCACCATCACCATCTTCAAATACAGTATTTTCTATTGTAGCACCATGGATAGCGCAT 2013996 Query 67017 AGCAATGCACCA---CCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTC 67073 || | ||| || |||| | ||| || || |||||||||||||| ||| |||| ||| Sbjct 2013997 AGTAGAGCAGCAGCGCCCAATACACCAGCAACCCCCATCATATGAAATGGGCTCAATGTC 2014056 Query 67074 CAGTTATGGAATCCTTG 67090 || ||||| || ||||| Sbjct 2014057 CAATTATGAAACCCTTG 2014073 >seq4293 Length=5823730 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 ||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 ||||||||| |||| || ||||| ||| | || ||| |||||||| | Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTA 2155225 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTT 67988 | | |||||||| ||||||||||| ||||| Sbjct 2155226 CAAATTGGTTGAAATTGAAACCATTTAGGTT 2155256 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || |||| || |||||||| |||||||| || | |||||||||||||||| || Sbjct 2950053 AATCAAAT--CTCCTCAAGTAGGATTCGAACCTACAACTAGTCGATTAACAGTCGATCGC 2950110 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| | |||||||||| |||| Sbjct 2950111 TCTATCACTGAGCTACTAAGGA 2950132 >seq6319 Length=5966559 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68113 TATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAG 68172 || ||||| ||||| || || || ||||| ||||| ||||| ||||| ||||||| | Sbjct 1421094 TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTAACCTTCA 1421153 Query 68173 TTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGC 68232 || | ||| |||| |||||||| | | || ||| || |||| |||||||||| Sbjct 1421154 TTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGC 1421213 Query 68233 ATTGCACTGAACAGAGATCCACCAAATAC 68261 || |||||||| || || || || ||||| Sbjct 1421214 ATAGCACTGAATAGGGAACCGCCGAATAC 1421242 >seq16698 Length=814 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 35498 AACAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGAT 35557 |||| | | | | ||||||| |||||||||||||||||||||| || ||||||| ||| Sbjct 726 AACACTAACAAATCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGAC 785 Query 35558 AGCTCTGCCGCTGAGCTACTGAGGA 35582 ||||| || ||||||||||||||| Sbjct 786 CGCTCTACCACTGAGCTACTGAGGA 810 >seq2500 Length=93118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| ||| ||||||| ||| || Sbjct 57263 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCGGTTAACAGCCGACCGC 57206 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 57205 TCTACCACTGAGCTACTGAGGA 57184 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTA 67929 | ||||||| | || || ||||| ||| Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGTA 214272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571929942414600