Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1810 87.8 3e-12 >seq1810 Length=4673341 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || |||| || | || | ||||| ||||||||||||| Sbjct 4157647 ATTCCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCG 4157706 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 4157707 GCCAGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGG 4157766 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || |||||||| || | ||| ||| ||||| || ||| Sbjct 4157767 GGAATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCA 4157826 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || || || || || || |||||| Sbjct 4157827 ACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCATT 4157877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899458668939600