Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1810 105 1e-17 seq2011 89.7 8e-13 >seq1810 Length=4673341 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || || || || ||||| | || |||||| ||| Sbjct 4157421 AATGCAAATTTTTGTGAAAACCCTCACGGGCAAGACAATTACCCTGGAGGTCGAAAGTTC 4157362 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| | ||||| || || || ||||| || ||||| || || Sbjct 4157361 GGACACGATTGATAATGTGAAGACGAAAATCCAGGACAAGGAAGGAATCCCTCCGGACCA 4157302 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || ||||||||||| ||| ||||| | |||| || || Sbjct 4157301 ACAGAGGCTTATTTTTGCTGGGAAGCAGCTCGAGGATGGGCGAACTCTTGCAGACTACAA 4157242 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || || |||| |||||||| ||| Sbjct 4157241 TATCCAGAAGGAATCGACCCTTCATTTGGTG 4157211 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | |||||||| || ||||| | || |||||| || Sbjct 4158104 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAAAGCTCA 4158045 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| | ||||| || ||||| ||||| || || ||||| || Sbjct 4158044 GACACAATTGACAATGTGAAGACAAAAATCCAGGATAAGGAAGGAATCCCCCCAGACCAG 4157985 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||||||||| ||| || || | | |||||||| Sbjct 4157984 CAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGATTATAAC 4157925 Query 156003 AT 156004 || Sbjct 4157924 AT 4157923 >seq2011 Length=5003947 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || || || || || || || ||||| ||| Sbjct 3037130 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACGATCACGTTGGAGGTCGAGAGCTCT 3037071 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || |||||||| || || || ||||| || || Sbjct 3037070 GACACGATTGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCTCCGGATCAG 3037011 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | |||||| ||||||||||| ||| ||| || | | ||||||||| Sbjct 3037010 CAGCGGCTGATCTTTGCCGGAAAGCAGCTCGATGATGGCAGGACCCTGGCGGATTATAAT 3036951 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| |||| || ||||| ||| | || | ||||| || Sbjct 3036950 ATCCAGAAGGAGTCGACCCTGCATTTGGTGCTGAGGCTCAGAGGAGG 3036904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731712772098000