Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1810 107 4e-18 >seq1810 Length=4673341 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | ||| | |||||| ||| |||||||| | Sbjct 4156737 ACCACCACGAAGACGGAGGACAAGGTGGAGAGTCGACTCTTTTTGGATGTTATAATCTGC 4156796 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| |||| |||| ||||| ||||||||||| | || || || ||||| || Sbjct 4156797 CAAAGTTCGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTTTGCTGGTCAGGGGG 4156856 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || | || |||||| || | ||| || ||| || Sbjct 4156857 GATTCCCTCCTTGTCCTGAATCTTTGTCTTGACATTATCAATGGTATCGGAGCTTTCAAC 4156916 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || ||||| || ||||| | || || | ||| ||||||||| Sbjct 4156917 CTCCAACGTGATGGTCTTTCCAGTAAGCGTCTTGACAAAGATCTGCATT 4156965 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || |||| || | ||||| |||||||| || Sbjct 4157647 ATTCCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCG 4157706 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || || ||||||||||| | ||||| || || || Sbjct 4157707 GCCAGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGG 4157766 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| | || |||||| || | ||| || ||| Sbjct 4157767 GGAATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCA 4157826 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || ||||| | || || | || ||||||||| Sbjct 4157827 ACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCATT 4157877 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || || || | || | ||||| ||| ||||||||| Sbjct 4157875 ATTCCACCTCTGAGGCGGAGGACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCA 4157934 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || ||||||||||| | ||||| || || || Sbjct 4157935 GCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGG 4157994 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || ||||| | || ||||| || | ||||| ||| Sbjct 4157995 GGGATTCCTTCCTTATCCTGGATTTTTGTCTTCACATTGTCAATTGTGTCTGAGCTTTCG 4158054 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || |||| ||| || ||||| Sbjct 4158055 ACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTAACAAAGATTTGCAT 4158104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984260459421750