Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5369 87.8 3e-12 seq1810 87.8 3e-12 seq790 86.0 1e-11 >seq5369 Length=1591519 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| ||||| || | | || || | |||| || | ||| || ||||||||||| || || Sbjct 1427505 AATGTTATAGTCAGCAAGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCT 1427564 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || |||||||| || ||||| || || || ||||| || || Sbjct 1427565 CTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGT 1427624 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || ||||| || || || ||||| ||||| || | || || | || || || Sbjct 1427625 ATCAGAGCTCTCTACCTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTTG 1427684 Query 172067 CAT 172069 ||| Sbjct 1427685 CAT 1427687 >seq1810 Length=4673341 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || ||||| | || | || || ||||| || ||| Sbjct 4157191 ATTCCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCT 4157250 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || || ||||||||||| | ||||||||||| || Sbjct 4157251 GCAAGAGTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGA 4157310 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || ||||| | || |||||| || || || || ||| Sbjct 4157311 GGGATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCG 4157370 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || | ||||| | || || |||||| Sbjct 4157371 ACCTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCATT 4157421 >seq790 Length=1848252 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || ||||||||||| || ||||| ||||| || || |||||||| | Sbjct 1587702 CGTCCTCAAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCT 1587643 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || || |||||| || || || || || || || | || | Sbjct 1587642 TGTCCTGAATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGA 1587583 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || ||||| | ||| |||| ||| |||||||| Sbjct 1587582 TGGTCTTGCCAGTGAGTGTCTTAACGAAGATCTGCAT 1587546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904939076349000