Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq281 111 5e-19 seq2214 109 2e-18 >seq281 Length=1258992 Score = 111 bits (122), Expect = 5e-19 Identities = 148/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| |||||||| | ||||||||||| || Sbjct 239844 TACCTTTTCTCTTGCCTCCCCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTA 239903 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| ||||| || |||||||| || || | |||| ||||| || | Sbjct 239904 GCATTGGAACAATGCCATTAGATGTGCCATTTGTCCCTCTGATATAACTACCAGTTGCAC 239963 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| |||||||| || ||||| || || | |||| || ||| || |||| Sbjct 239964 GAATATTATGAACTGATACCCCAATCCCTCCAGCTGATTTGCTGATGACAGCACACTCCT 240023 Query 156226 TTACAGTATTGAAAATACCTTCAAT 156250 | | |||| |||| |||||||| Sbjct 240024 TCAACGTATCATAAATTCCTTCAAT 240048 >seq2214 Length=9977371 Score = 109 bits (120), Expect = 2e-18 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || ||||||||||| || |||||||||| | ||||||| || | || | || Sbjct 4795779 CCCACAGCATCAATCTCATCAATGAAAACAATGCACGGAGCCTTCGACTTGGCCTTCTCA 4795838 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || || | || ||||||| || || ||| ||||| || || || || Sbjct 4795839 AACAAATCCCTGACCCTCGAAGCTCCAACTCCCACGAACAACTCTACGAACTCCGAGGCT 4795898 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | ||||| || |||||||| || ||||||| || ||||| ||||| Sbjct 4795899 G-CACAAGAGAAGAATGGAACCCCAGCTTCGCCGGCAACTGCCCGGGCTAGAAGGGTCTT 4795957 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || ||||| ||||| || | || || ||| || || | ||||| || || | | Sbjct 4795958 CCCGGTTCCGGGTGGGCCAACCAAAAGGCATCCTTTCGGGATCTTTGCTCCCAAAGCCGT 4796017 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 || || |||||| |||| || || || |||| || | ||||| | || |||| ||| Sbjct 4796018 GTACTTGTCAGGGTTCTTCAAGAAATCAACAACCTCTTGGAGTTCCAACTTGGCCTGATC 4796077 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 ||||| |||||||| || || Sbjct 4796078 GGCACCTGCAACATCAGCGAATGT 4796101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471489382375485