Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2507 147 2e-30 seq4293 138 1e-27 seq3240 129 6e-25 seq4399 105 7e-18 >seq2507 Length=3123735 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 160113 GGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAA 160172 || || ||||| || || ||||| || || ||||| || |||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 160173 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCA 160232 ||||| |||||||| || |||||||||||||| || || || |||||||| | ||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 160233 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCT 160292 ||| |||| || ||||| || ||||||||| |||| |||||||| || || | || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 160293 AGAGGCAACGCCCTTTAAT 160311 | || ||||| ||||||| Sbjct 2652107 CGTGGAAACGCTCTTTAAT 2652089 Score = 102 bits (112), Expect = 9e-17 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866 ||||| ||||| || ||||| || | || || ||||||||||| ||||||||| || | Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 159867 GG---TGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAA 159923 || || || ||||| | || |||||||| | ||| |||| || || | | |||| Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 159924 GATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTAC 159983 ||||| || |||||||| || || ||| | ||||||||| || | ||||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 159984 TCTATGGTCACTGCAAA 160000 || |||||||||| || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536 || ||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCTG 158567 || || |||||||| || ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 129 bits (142), Expect = 6e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 158375 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 158434 || |||||||| || || | || || ||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 158435 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTG 158494 |||||||| || | ||||| |||| |||||||| | || || ||||| ||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 158495 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158535 ||||||||| ||||||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 158451 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTG 158510 ||||| |||| |||||||| | || || ||||| ||| | | ||||||| | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 158511 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 ||||||||||||||||||| ||||| || || |||||||| || ||||| |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548255094294600