Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2507 145 8e-30 seq4293 111 2e-19 seq3240 111 2e-19 seq666 84.2 2e-11 seq4399 82.4 8e-11 >seq2507 Length=3123735 Score = 145 bits (160), Expect = 8e-30 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 153134 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 153193 ||||||| || | ||| | |||| | || ||||| | | ||||| ||||| || | Sbjct 2652331 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 2652272 Query 153194 TTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGA 153253 | ||||| || || || || || || || ||| | || | ||||||||||||||||| | Sbjct 2652271 TACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAA 2652212 Query 153254 CGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTG 153313 | ||||| || || ||||| || || ||||||||| ||||||||||| |||| || | Sbjct 2652211 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 2652152 Query 153314 ACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 | || |||||||| ||| | | ||||| || ||||| | || || || |||||||| Sbjct 2652151 ATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCCCGTGGAAACGCTCT 2652094 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 152872 CAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTG 152931 ||||| || || || |||||||||| || |||||||||||||| ||||| ||| | ||| Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 152932 GGAGGGGC--CT-TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAA 152988 || | || || | || | || || ||||||| |||| |||| |||||| | | | || Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 152989 GATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTAT 153048 |||||||| ||||| || ||| ||||| || ||||||| ||| | || ||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 153049 TCGATGGTTACTGCTAA 153065 || |||| |||||||| Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 151676 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 151735 ||||| || |||||||| |||||||| | | | ||| |||| || || | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 151736 ACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 151795 || ||||| || |||| ||||| || || ||||||||||||||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 151796 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 151826 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 151634 GGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAAC 151693 ||||||||||| ||||| | ||| ||||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 151694 TTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTG 151753 |||||||| || | | ||| |||| || || | || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 151794 ||||| || || ||||||||||||||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq666 Length=4378875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 151564 CATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 151623 || |||||||| |||| ||||||||||| ||||| | || |||||||| | || || Sbjct 3957877 CAGCTTCCAATGCGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGTTGCTTG 3957818 Query 151624 GCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCA 151672 |||||| || ||||| |||| ||||| | ||| | ||||| |||||| Sbjct 3957817 GCCTGTAGTAGGTATATGGTCTACTGCTTTAGGTATTAGCACTATGGCA 3957769 >seq4399 Length=3202280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 || || ||||| || || | ||||| | || ||||||||||||||||| || ||| Sbjct 214274 AATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGT 214215 Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 |||||||| ||||||||||| ||||| |||||| Sbjct 214214 AATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549502822776600