Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4399 210 3e-48 seq3950 93.3 5e-13 seq16998 86.0 8e-11 seq4939 86.0 8e-11 >seq4399 Length=3202280 Score = 210 bits (232), Expect = 3e-48 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| ||||||||||||||||| || ||||| | |||| | | ||| Sbjct 384342 GAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGAGATCTGG 384401 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||||| |||| ||||||||| ||||| ||||| ||||||||| Sbjct 384402 ACCTCCTTCATGAACCGGGCGGCGAGGTTCTCGAGGACGATCCCGTCAGAGGCGGCGAAG 384461 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||| || ||| || ||||||||| || | | || | |||||||| | Sbjct 384462 AAAGCGAGGATATGGGTGACGAAATGGCGCTCGCCGGAGGTTAGATTCTCCCAGTGGCGG 384521 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| | ||||||||||||||| || ||||||| |||||||| ||||| |||||| Sbjct 384522 GTGTCCTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTAC 384581 Query 869873 ATCTCCCATAC 869883 || ||||| || Sbjct 384582 ATTTCCCACAC 384592 Score = 150 bits (166), Expect = 2e-30 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | |||||| ||||||||||| || | ||||| ||| Sbjct 383748 GCCTTCTGGTACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCAGCGATATC 383807 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||| ||||||| || | ||| ||| |||| || | || | | Sbjct 383808 AGCTCCATCCAGTCGAAGGGGTTGGCCGCGTCGTACACCTTCCCGCAGCCCAACGCCACC 383867 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || || ||||| |||||||| | ||||||| || ||||||| || | Sbjct 383868 AGCAGCCGGTCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACC 383927 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||||| |||||||| |||| |||||||| |||||||||| || || || Sbjct 383928 AGCGCGCACGGCAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTC 383980 >seq3950 Length=3597155 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | || ||||| ||||||||||||||||| || | | || Sbjct 3053423 GCTTGGCGAGCTCCCCAGGGAGGACAAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 3053482 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| | ||| | ||| |||| | Sbjct 3053483 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGATGACTCCTGGGCGAGCTTCTCGAAGA 3053542 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||| | |||| ||||||| || | |||||||| Sbjct 3053543 TGTCGTTGATGAAGCTGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCGGGGT 3053602 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| | ||| Sbjct 3053603 GGACCTGCTTCAGCACCTTGAATATG 3053628 >seq16998 Length=1096 Score = 86.0 bits (94), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||| | ||||| |||| | ||||| || | ||||||| Sbjct 811 ATGTCGTTGATGAAGCTGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCGGGG 752 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| ||||||||| ||||| Sbjct 751 TGCACCTGCTTCAGCACCTTGAAGATG 725 >seq4939 Length=4123586 Score = 86.0 bits (94), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||| | ||||| |||| | ||||| || | ||||||| Sbjct 899304 ATGTCGTTGATGAAGCTGTTCATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCGGGG 899363 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| ||||||||| ||||| Sbjct 899364 TGCACCTGCTTCAGCACCTTGAAGATG 899390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105710864192385