Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4399 217 2e-50 seq3950 143 4e-28 seq4810 134 2e-25 seq666 120 5e-21 seq15799 86.0 1e-10 >seq4399 Length=3202280 Score = 217 bits (240), Expect = 2e-50 Identities = 234/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||| ||||| ||| ||| || ||||| || || |||||||| ||||| ||||| Sbjct 384077 GATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGAT 384136 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 ||||||||| || || ||||| ||||| ||||| ||| |||||| | | | || ||| Sbjct 384137 GGCACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCAGGCAAATGCAATCACCCTCTC 384196 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 || || | || ||| || |||||||| ||| |||||||| ||||| ||| | Sbjct 384197 CGCGAACGACTCGGAGCCGTC------GATCCACTGCATGGCCCACTCCGCCTTCTTCTT 384250 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGAC 794594 ||| |||| || || ||||| || || || ||| ||||||||||| | | |||||||| Sbjct 384251 CACGCAGGGGACGGTCTCGATCGCCCGGAACAGGCGGTCCTTCTCGGCGGAGTCCTTGAT 384310 Query 794595 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAA 794654 |||||| |||| ||| || ||| |||| ||||||||||| || |||||||||||||| Sbjct 384311 GTAGGTCTCGAGGAGCAGACTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAA 384370 Query 794655 GCCATAAAAG 794664 |||||| ||| Sbjct 384371 GCCATAGAAG 384380 Score = 150 bits (166), Expect = 3e-30 Identities = 170/225 (76%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | |||||| ||||||||||| || | ||||| |||| ||||||| Sbjct 383757 TACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCAGCGATATCAGCTCCATC 383816 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||| |||||||||| ||| |||| |||| || | || | | ||||| ||| Sbjct 383817 CAGTCGAAGGGGTTGGCCGCGTCGTACACCTTCCCGCAGCCCAACGCCACCAGCAGCCGG 383876 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 || || ||||| || |||||||| | ||||||| || ||||||| || | ||||| ||| Sbjct 383877 TCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGCGCGCAC 383936 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||||| |||| |||||||| |||||||||| || || || Sbjct 383937 -GGCAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTC 383980 Score = 143 bits (158), Expect = 4e-28 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| | ||||||||||||||||| ||| |||| |||||||| ||||| || Sbjct 384386 GGCCTCGGAGATCTGGACCTCCTTCATGAACCGGGCGGCGAGGTTCTCGAGGACGATCCC 384445 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| ||||||||| || ||||||| || ||| || || |||||| || | | || Sbjct 384446 GTCAGAGGCGGCGAAGAAAGCGAGGATATGGGTGACGAAATGGCGCTCGCCGGAGGTTAG 384505 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||||| ||||| | |||||| |||||||| || ||||| |||||||| Sbjct 384506 ATTCTCCCAGTGGCGGGTGTCCTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGC 384565 Query 796329 CTCGGCCTTTTTGTACATCTCCCA 796352 ||| ||||| |||||||| ||||| Sbjct 384566 CTCCGCCTTCTTGTACATTTCCCA 384589 >seq3950 Length=3597155 Score = 143 bits (158), Expect = 4e-28 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| ||||| |||||||| ||||| || ||||||||| |||| || || || | | Sbjct 3053384 TGAACTTCGTGACCGCCTTGGTCCCCTCAGACACGGCGTGCTTGGCGAGCTCCCCAGGGA 3053443 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||||||||||||||| |||| | ||| ||| |||||| || Sbjct 3053444 GGACAAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 3053503 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| | ||| | ||| |||| |||||||||| || ||||| Sbjct 3053504 GGGCGAGGCGGGATGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 3053563 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| || | ||||||||| |||||||| ||||||||| Sbjct 3053564 TGATGCCCATGGCCTTGCTGGAGATCCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 3053622 >seq4810 Length=5543293 Score = 134 bits (148), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || ||||||||| |||| || ||||| | | Sbjct 227203 TGAACTTGGTGACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCGAGCTCGCCAGGGA 227262 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||||||| | ||| ||| |||||| | Sbjct 227263 GGACGAGCCTGACGGCGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTACC 227322 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || |||||| ||||| | ||| |||| |||||||| | || ||||| Sbjct 227323 TGGCAAGGCGGGATGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTAATGAAGCTGTTCA 227382 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| | ||||| || | ||| ||||| |||||||| || |||||| Sbjct 227383 TGATCCCCATGGCCTTGCTTGAGATCCCAATGTCCGGGTGGACCTGCTTCAGGACCTTG 227441 >seq666 Length=4378875 Score = 120 bits (132), Expect = 5e-21 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| ||||| |||||||| ||||| ||||| |||||| |||||| ||| ||| | | Sbjct 185653 TGAACTTCGTGACCGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAATTCACCGGGGA 185712 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||| ||||||||||| |||| ||| ||| |||||| | Sbjct 185713 GGACGAGCCTGACGGCAGTCTGGATCTCCCGGGAAGTGATGGTGGGCTTCTTGTTGTACC 185772 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | |||||| | ||| |||| |||||||||| || ||||| Sbjct 185773 TCGCGAGCCTCGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 185832 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||| | ||| ||||||| || | ||| ||||| ||||||||||| |||||| Sbjct 185833 TAATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGGTGGACCTGCTTGAGGACCTTG 185891 >seq15799 Length=483 Score = 86.0 bits (94), Expect = 1e-10 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || || ||||||||| |||||| ||| ||| ||| Sbjct 112 TGTACTTGGTCACAGCCTTTGTGCCTTCAGACACGGCGTGCTTGGCCAATTCACCGGGCA 53 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT 1485581 || || || || || ||||||||||| |||| | ||| || |||||| Sbjct 52 GGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGATGGTAGAGCGCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914394950765795