Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4810 104 2e-17 seq5369 87.8 1e-12 >seq4810 Length=5543293 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || || || ||||| ||| |||| |||| ||| | Sbjct 518449 ATGCAGATCTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 518508 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || || || ||| | || ||| || Sbjct 518509 -GACACCATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 518567 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||||||||| ||||| ||||||| | || | ||||||||||| Sbjct 518568 GCAGAGGCTTATCTTTGCGGGTAAGCAGCTCGAGGACGGGAGGACCCTTGCGGACTACAA 518627 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||| || |||||||| || | ||| ||||| |||| Sbjct 518628 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAG 518663 >seq5369 Length=1591519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| || || | || || || ||||| || |||| ||| ||| Sbjct 1427687 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACCATCACGCTCGAGGTAGAGAGCT-C 1427629 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || ||||| | ||| ||| || Sbjct 1427628 TGATACAATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCGGACCA 1427569 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || || || ||||||| | ||| | || ||||| || Sbjct 1427568 GCAGAGGTTGATTTTTGCTGGGAAGCAACTCGAGGACGGAAGAACTCTTGCTGACTATAA 1427509 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | ||| ||||| | | |||| || |||| Sbjct 1427508 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTGCGGGGAGGAA 1427459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398792188882045