Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2507 150 2e-31 seq3240 138 1e-27 seq4293 132 5e-26 seq4399 102 9e-17 >seq2507 Length=3123735 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 159594 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 159653 ||||| ||||| || || ||||| || || ||||| || |||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 159654 GATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCT 159713 ||||| ||||||||||| ||||||||||| || ||||| | || ||||| | |||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 159714 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCA 159773 ||| |||| || ||||| || ||||||||| | || |||||||| || |||||||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 159774 AGAGGTAACGC 159784 | || ||||| Sbjct 2652107 CGTGGAAACGC 2652097 Score = 105 bits (116), Expect = 7e-18 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 159288 CAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTA 159347 |||||||| || ||||||||| | | ||| || ||||||||||| ||||||||| | | Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 159348 GG---TGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAG 159404 || || || || |||| ||||| ||||| | ||| | |||||||| ||| || Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 159405 GATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTAT 159464 ||||| || ||||| || || || ||| | ||||||||| || | |||||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 159465 TCTATGGTCACTGCAAA 159481 || |||||||||| || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq3240 Length=2626545 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 157846 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 157905 || |||||||| ||||| | || | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 157906 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTG 157965 |||||||| || | ||||| |||| |||||||| | || || ||||| ||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 157966 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158006 ||||||||| ||||||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 132 bits (146), Expect = 5e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158007 || ||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 158008 GCACACAACTTCCCACTGGATCTTGCTGCTG 158038 || || |||||||| || || || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq4399 Length=3202280 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 157922 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTG 157981 ||||| |||| |||||||| | || || ||||| ||| | | ||||||| | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 157982 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 ||||||||||||||||||| ||||| || || |||||||| || || || |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545154968912400