Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2507 129 7e-25 seq2492 84.2 3e-11 >seq2507 Length=3123735 Score = 129 bits (142), Expect = 7e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817 || || ||||| || || ||||| ||||| || || || |||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877 |||||||| || || || ||||| || || || ||||| | || ||||| | |||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCT 179937 ||| |||| || ||||| || ||||||||| | || |||||||| || || ||||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 179938 AGTGGTAACGCACT 179951 |||| ||||| || Sbjct 2652107 CGTGGAAACGCTCT 2652094 >seq2492 Length=5361119 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 179203 CGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 179262 || ||||| ||| | || || || |||| ||| || ||||||||||| || |||| ||| Sbjct 375415 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTA 375474 Query 179263 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAA 179321 || || |||||| | ||||| |||||||| || || ||| || | | || ||||| || Sbjct 375475 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAA 375533 Query 179322 TGCGATTGCTTTTAC 179336 ||| || || | ||| Sbjct 375534 TGCAATCGCATATAC 375548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605535429529800